13 lines
478 B
YAML
13 lines
478 B
YAML
# Include shared CI
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include:
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- project: "epi2melabs/ci-templates"
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file: "wf-containers.yaml"
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variables:
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# Workflow inputs given to nextflow.
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# The workflow should define `--out_dir`, the CI template sets this.
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# Only common file inputs and option values need to be given here
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# (not things such as -profile)
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NF_WORKFLOW_OPTS: "--fastq test_data/fastq \
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--ref_genome test_data/SIRV_150601a.fasta --ref_annotation test_data/SIRV_isoforms.gtf"
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