43 lines
1.2 KiB
Python
Executable File
43 lines
1.2 KiB
Python
Executable File
#!/usr/bin/env python
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"""Create workflow report."""
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import argparse
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from aplanat.components import fastcat
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from aplanat.components import simple as scomponents
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from aplanat.report import WFReport
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import conda_versions
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def main():
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"""Run the entry point."""
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parser = argparse.ArgumentParser()
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parser.add_argument("report", help="Report output file")
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parser.add_argument("summaries", nargs='+', help="Read summary file.")
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parser.add_argument(
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"--versions", required=True,
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help="directory containing CSVs containing name,version.")
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parser.add_argument(
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"--revision", default='unknown',
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help="git branch/tag of the executed workflow")
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parser.add_argument(
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"--commit", default='unknown',
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help="git commit of the executed workflow")
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args = parser.parse_args()
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report = WFReport(
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"Workflow Template Sequencing report", "wf-template",
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revision=args.revision, commit=args.commit)
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report.add_section(
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section=fastcat.full_report(args.summaries))
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report.add_section(
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section=scomponents.version_table(args.versions))
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# write report
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report.write(args.report)
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if __name__ == "__main__":
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main()
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