28 lines
431 B
YAML
28 lines
431 B
YAML
name: epi2melabs-wf-isoforms
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channels:
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- epi2melabs
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- bioconda
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- conda-forge
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- defaults
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dependencies:
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- python==3.8.*
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- aplanat >=0.5.0
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- epi2melabs
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- minimap2
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- samtools
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- bedtools
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- pychopper
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- pandas
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- seaborn
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- requests
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- gffread
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- seqkit
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- csvtk
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- stringtie==2.1.1
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- gffcompare
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- curl
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- pysam
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- spoa==3.4.0
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- fastcat
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- isonclust2
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