kfukuta/wf-transcriptomes-v202
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Merge branch 'CW-2217' into 'dev'

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CW-2217 fix ordering of sample_ids

Closes CW-2217

See merge request epi2melabs/workflows/wf-transcriptomes!112
This commit is contained in:
Sarah Griffiths 2023-07-12 11:05:34 +00:00
commit 2a5ae64617
2 changed files with 3 additions and 1 deletions
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3
CHANGELOG.md
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@ -12,7 +12,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- Values for the condition may be any two distinct strings, for example: treated/untreated; sample/control etc. - Values for the condition may be any two distinct strings, for example: treated/untreated; sample/control etc.
### Fixed ### Fixed
- Remove default of null for `--ref_transcriptome` - Remove default of null for `--ref_transcriptome`.
- Read mapping summary table in the report has correct sample_ids.
## [v0.1.13] ## [v0.1.13]
### Added ### Added

1
bin/workflow_glue/report.py
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@ -901,6 +901,7 @@ def de_section(report):
def main(args): def main(args):
"""Run the entry point.""" """Run the entry point."""
sample_ids = args.sample_ids sample_ids = args.sample_ids
sample_ids.sort()
report = WFReport( report = WFReport(
"Transcript isoform report", "wf-transcriptomes", "Transcript isoform report", "wf-transcriptomes",