kfukuta/wf-transcriptomes-v202
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Merge branch 'tubemap' into 'dev'

Browse Source 
Add tube map [CW-7218]

See merge request epi2melabs/workflows/wf-transcriptomes!254
This commit is contained in:
Kiah McIntosh 2026-05-14 10:50:19 +00:00
commit 4fa78ea462
3 changed files with 14 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

5
README.md
View File

@ -29,6 +29,11 @@ together. The workflow also produces separate per-sample transcriptomes, so
each sample has its own GTF, FASTA, count tables, and optional `SQANTI3` each sample has its own GTF, FASTA, count tables, and optional `SQANTI3`
summary alongside the shared results. summary alongside the shared results.
<figure>
<img src="docs/images/wf-transcriptomes.drawio.svg" alt="wf-transcriptomes overview schematic."/>
<figcaption>Schematic depicting wf-transcriptomes workflow.</figcaption>
</figure>
For users familiar with earlier transcriptome workflows, the main change is For users familiar with earlier transcriptome workflows, the main change is
that transcript discovery, quantification, and optional differential analysis that transcript discovery, quantification, and optional differential analysis
now use the shared `bambu` outputs rather than the older now use the shared `bambu` outputs rather than the older

5
docs/02_introduction.md
View File

@ -21,6 +21,11 @@ together. The workflow also produces separate per-sample transcriptomes, so
each sample has its own GTF, FASTA, count tables, and optional `SQANTI3` each sample has its own GTF, FASTA, count tables, and optional `SQANTI3`
summary alongside the shared results. summary alongside the shared results.
<figure>
<img src="docs/images/wf-transcriptomes.drawio.svg" alt="wf-transcriptomes overview schematic."/>
<figcaption>Schematic depicting wf-transcriptomes workflow.</figcaption>
</figure>
For users familiar with earlier transcriptome workflows, the main change is For users familiar with earlier transcriptome workflows, the main change is
that transcript discovery, quantification, and optional differential analysis that transcript discovery, quantification, and optional differential analysis
now use the shared `bambu` outputs rather than the older now use the shared `bambu` outputs rather than the older

4
docs/images/wf-transcriptomes.drawio.svg Normal file
View File

File diff suppressed because one or more lines are too long
Side by Side

After

Width:  |  Height:  |  Size: 834 KiB