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Add AWS demo url configuration

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Sam Nicholls 2023-05-16 14:59:53 +01:00
parent fcefe9e138
commit 63bef44dcc
2 changed files with 12 additions and 4 deletions
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15
CHANGELOG.md
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@ -1,21 +1,24 @@
# Changelog # Changelog
All notable changes to this project will be documented in this file. All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
## [unreleased] ## [unreleased]
### Changed ### Changed
- LICENSE to Oxford Nanopore Technologies PLC. Public License Version 1.0. - LICENSE to Oxford Nanopore Technologies PLC. Public License Version 1.0.
### Added
- Configuration for running demo data in AWS
## [v0.1.10] ## [v0.1.10]
### Changed ### Changed
- Condition sheet parameter description fixed to CSV - Condition sheet parameter description fixed to CSV
- Update fastqingress - Update fastqingress
## [v0.1.9] ## [v0.1.9]
### Changed ### Changed
- Simplify JAFFAL docs - Simplify JAFFAL docs
## [v0.1.8] ## [v0.1.8]
### Changed ### Changed
@ -31,15 +34,16 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
### Changed ### Changed
- Removed sanitize option - Removed sanitize option
- Reduce size of differential expression data. - Reduce size of differential expression data.
### Added ### Added
- Improved DE explanation in docs - Improved DE explanation in docs
- Option to turn off transcript assembly steps with param transcript_assembly - Option to turn off transcript assembly steps with param transcript_assembly
### Fixed ### Fixed
- Fix JAFFAL terminating workflow when no fusions found. - Fix JAFFAL terminating workflow when no fusions found.
- Error if condition sheet and sample sheet don't match. - Error if condition sheet and sample sheet don't match.
- Failed to plot DE graphs when one of data sets is 0 length. - Failed to plot DE graphs when one of data sets is 0 length.
## [v0.1.5] ## [v0.1.5]
### Added ### Added
- Differential transcript and gene expression subworkflow - Differential transcript and gene expression subworkflow
@ -47,6 +51,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
## [v0.1.4] ## [v0.1.4]
### Added ### Added
- JAFFAL fusion detection subworkflow - JAFFAL fusion detection subworkflow
### Changed ### Changed
- Args parser for fastqingress - Args parser for fastqingress
- Set out_dir option type to ensure output is written to correct directory on Windows - Set out_dir option type to ensure output is written to correct directory on Windows
@ -74,6 +79,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
## [v0.1.0] ## [v0.1.0]
### Added ### Added
- Added the denovo pipeline - Added the denovo pipeline
### Changed ### Changed
- Updates to the report plots - Updates to the report plots
@ -81,3 +87,4 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
### Added ### Added
- First release - First release
- Initial port of Snakemake WF from https://github.com/nanoporetech/pipeline-nanopore-ref-isoforms - Initial port of Snakemake WF from https://github.com/nanoporetech/pipeline-nanopore-ref-isoforms

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nextflow_schema.json
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@ -4,6 +4,7 @@
"title": "epi2me-labs/wf-transcriptomes", "title": "epi2me-labs/wf-transcriptomes",
"description": "Transcriptome analysis including gene fusions, differential expression as well as assembly and annotation of cDNA and direct RNA sequencing data.", "description": "Transcriptome analysis including gene fusions, differential expression as well as assembly and annotation of cDNA and direct RNA sequencing data.",
"demo_url": "https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-transcriptomes/wf-transcriptomes-demo.tar.gz", "demo_url": "https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-transcriptomes/wf-transcriptomes-demo.tar.gz",
"aws_demo_url": "https://ont-exd-int-s3-euwst1-epi2me-labs.s3.amazonaws.com/wf-transcriptomes/wf-transcriptomes-demo/aws.nextflow.config",
"url": "https://github.com/epi2me-labs/wf-transcriptomes", "url": "https://github.com/epi2me-labs/wf-transcriptomes",
"type": "object", "type": "object",
"definitions": { "definitions": {