Remove macos run
This commit is contained in:
parent
57ff953621
commit
7e013608f9
@ -9,28 +9,3 @@ variables:
|
|||||||
# Only common file inputs and option values need to be given here
|
# Only common file inputs and option values need to be given here
|
||||||
# (not things such as -profile)
|
# (not things such as -profile)
|
||||||
NF_WORKFLOW_OPTS: "--fastq test_data"
|
NF_WORKFLOW_OPTS: "--fastq test_data"
|
||||||
|
|
||||||
|
|
||||||
macos-run:
|
|
||||||
stage: test
|
|
||||||
script:
|
|
||||||
- docker run hello-world
|
|
||||||
- wget -qO- https://get.nextflow.io | bash
|
|
||||||
# pull back the image
|
|
||||||
- echo ${CI_BUILD_TOKEN} | docker login --username gitlab-ci-token --password-stdin ${CI_REGISTRY}
|
|
||||||
- docker pull ${CI_REGISTRY_IMAGE}:${CI_COMMIT_SHORT_SHA}
|
|
||||||
# run the workflow
|
|
||||||
# custom scripting
|
|
||||||
- echo "Running workflow specific script"
|
|
||||||
- echo "Running:'${NF_BEFORE_SCRIPT}'"
|
|
||||||
- eval ${NF_BEFORE_SCRIPT}
|
|
||||||
# left for invididual project to control ${NF_WORKFLOW_OPTS}
|
|
||||||
- CMD="./nextflow ${NF_RUN_OPTS_TAG_TEST} -profile standard ${NF_OUTPUT_OPTS} ${NF_WORKFLOW_OPTS}"
|
|
||||||
- echo "Running:'${CMD}'"
|
|
||||||
- ${CMD}
|
|
||||||
needs:
|
|
||||||
- ["docker-run"]
|
|
||||||
only:
|
|
||||||
- "/^dev$/"
|
|
||||||
except:
|
|
||||||
- tags
|
|
||||||
|
|||||||
Loading…
Reference in New Issue
Block a user