kfukuta/wf-transcriptomes-v202
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Tu 5.6.1 [CW-6099]

Browse Source
This commit is contained in:
Neil Horner 2025-05-09 07:05:34 +00:00
parent 1b3f49a1ac
commit c84a197da5
2 changed files with 5 additions and 2 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
.pre-commit-config.yaml
View File

@ -24,6 +24,8 @@ repos:
- flake8-builtins - flake8-builtins
- flake8-absolute-import - flake8-absolute-import
- flake8-print - flake8-print
# avoid snowballstemmer>=3.0 as it causes flake8-docstrings to stop working [CW-6098]
- snowballstemmer==2.2.0
args: [ args: [
"bin", "bin",
"--import-order-style=google", "--import-order-style=google",

5
CHANGELOG.md
View File

@ -7,12 +7,13 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
## [Unreleased] ## [Unreleased]
### Changed ### Changed
- Updated to wf-template v5.6.0, changing: - Updated to wf-template v5.6.1, changing:
- Reduce verbosity of debug logging from fastcat which can occasionally occlude errors found in FASTQ files during ingress. - Reduce verbosity of debug logging from fastcat which can occasionally occlude errors found in FASTQ files during ingress.
- Log banner art to say "EPI2ME" instead of "EPI2ME Labs" to match current branding. This has no effect on the workflow outputs. - Log banner art to say "EPI2ME" instead of "EPI2ME Labs" to match current branding. This has no effect on the workflow outputs.
- pre-commit configuration to resolve an internal dependency problem with flake8. This has no effect on the workflow.
### Fixed ### Fixed
- Updated to wf-template v5.6.0, fixing: - Updated to wf-template v5.6.1, fixing:
- dacite.exceptions.WrongTypeError during report generation when barcode is null. - dacite.exceptions.WrongTypeError during report generation when barcode is null.
- Sequence summary read length N50 incorrectly displayed minimum read length, it now correctly shows the N50. - Sequence summary read length N50 incorrectly displayed minimum read length, it now correctly shows the N50.
- Sequence summary component alignment and coverage plots failed to plot under some conditions. - Sequence summary component alignment and coverage plots failed to plot under some conditions.