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Testnewmamba

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This commit is contained in:
Chris Wright 2021-06-30 16:59:26 +00:00
parent c11f0f214b
commit feb1c5e9fd
3 changed files with 7 additions and 2 deletions
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4
CHANGELOG.md
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@ -4,6 +4,10 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
## [v0.0.6]
### Changed
- Explicitely install into base conda env
## [v0.0.5] ## [v0.0.5]
### Added ### Added
- Software versioning report example. - Software versioning report example.

3
Dockerfile
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@ -6,7 +6,8 @@ COPY $ENVFILE $HOME/environment.yaml
RUN \ RUN \
. $CONDA_DIR/etc/profile.d/mamba.sh \ . $CONDA_DIR/etc/profile.d/mamba.sh \
&& micromamba activate \ && micromamba activate \
&& micromamba install --file $HOME/environment.yaml \ && micromamba install -n base --file $HOME/environment.yaml \
&& micromamba clean --all --yes \
&& fix-permissions $CONDA_DIR \ && fix-permissions $CONDA_DIR \
&& fix-permissions $HOME && fix-permissions $HOME

2
nextflow.config
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@ -14,7 +14,7 @@ params {
help = false help = false
fastq = null fastq = null
out_dir = "output" out_dir = "output"
wfversion = "v0.0.5" wfversion = "v0.0.6"
aws_image_prefix = null aws_image_prefix = null
aws_queue = null aws_queue = null
} }