Sarah Griffiths
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0129592acc
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Merge branch 'tidy-params' into 'dev'
Tidy params
See merge request epi2melabs/workflows/wf-transcriptomes!283
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2026-05-27 15:40:53 +00:00 |
|
Sam Nicholls
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bca0f01bf6
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Tidy params
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2026-05-27 15:40:53 +00:00 |
|
Neil Horner
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26d830a916
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Merge branch 'condition_report_fix' into 'dev'
Condition report fix [CW-7283]
See merge request epi2melabs/workflows/wf-transcriptomes!313
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2026-05-27 15:05:18 +00:00 |
|
Neil Horner
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3e53b755cc
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Condition report fix [CW-7283]
|
2026-05-27 15:05:18 +00:00 |
|
Sarah Griffiths
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541de0c1f9
|
Merge branch 'stop-demo-release' into 'dev'
Avoid publishing demo for transcriptomes
See merge request epi2melabs/workflows/wf-transcriptomes!316
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2026-05-27 14:37:54 +00:00 |
|
Sarah Griffiths
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ef08219e11
|
Avoid publishing demo for transcriptomes
|
2026-05-27 14:37:53 +00:00 |
|
Neil Horner
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10b2013b6a
|
Merge branch 'transcriptome_table_order' into 'dev'
Report minor fixes [CW-7281]
See merge request epi2melabs/workflows/wf-transcriptomes!309
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2026-05-27 13:20:41 +00:00 |
|
Neil Horner
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722d736f24
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Report minor fixes [CW-7281]
|
2026-05-27 13:20:41 +00:00 |
|
Sam Nicholls
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9cba80832d
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Merge branch 'unnecessary-igv' into 'dev'
Publish refs for IGV only when necessary [CW-7280]
See merge request epi2melabs/workflows/wf-transcriptomes!306
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2026-05-27 12:24:08 +00:00 |
|
Sam Nicholls
|
262f49944e
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Publish refs for IGV only when necessary [CW-7280]
|
2026-05-27 12:24:07 +00:00 |
|
Natalia Garcia
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c96be955b5
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Merge branch 'template-updates-sorting' into 'dev'
Template updates: sort threads param
See merge request epi2melabs/workflows/wf-transcriptomes!311
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2026-05-27 11:59:12 +00:00 |
|
Natalia Garcia
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531975c004
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Template updates: sort threads param
|
2026-05-27 11:59:11 +00:00 |
|
Natalia Garcia
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d73b9a2721
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Merge branch 'template-updates2' into 'dev'
Template updates: reference
See merge request epi2melabs/workflows/wf-transcriptomes!310
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2026-05-27 10:00:41 +00:00 |
|
Natalia Garcia
|
9d59c6b902
|
Template updates: reference
|
2026-05-27 10:00:40 +00:00 |
|
Natalia Garcia
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33ad57cdaa
|
Merge branch 'CW-7279' into 'dev'
Use mode copy in publishDir [CW-7279]
Closes CW-7279
See merge request epi2melabs/workflows/wf-transcriptomes!308
|
2026-05-27 09:29:30 +00:00 |
|
Natalia Garcia
|
7e301319fc
|
Use mode copy in publishDir [CW-7279]
|
2026-05-27 09:29:30 +00:00 |
|
Sam Nicholls
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dda764f48c
|
Merge branch 'cw-7196-b' into 'dev'
Per-sample mod summary
See merge request epi2melabs/workflows/wf-transcriptomes!294
|
2026-05-27 08:11:02 +00:00 |
|
Sam Nicholls
|
4bc3cf727f
|
Per-sample mod summary
|
2026-05-27 08:11:02 +00:00 |
|
Natalia Garcia
|
9d684eeb29
|
Merge branch 'use-extra-validation' into 'dev'
Check is a valid sample sheet use the extensive validation [CW-7210]
See merge request epi2melabs/workflows/wf-transcriptomes!272
|
2026-05-27 08:10:04 +00:00 |
|
Natalia Garcia
|
0ae50f9a35
|
Check is a valid sample sheet use the extensive validation [CW-7210]
|
2026-05-27 08:10:04 +00:00 |
|
Sam Nicholls
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74cbe196b2
|
Merge branch 'fix-ci-test-2' into 'dev'
Restore modkit test with smaller gtf, fix join error
See merge request epi2melabs/workflows/wf-transcriptomes!305
|
2026-05-26 20:12:45 +00:00 |
|
Sam Nicholls
|
b6f9efd9ae
|
Restore modkit test with smaller gtf, fix join error
|
2026-05-26 20:12:45 +00:00 |
|
Sam Nicholls
|
e28be80e1a
|
Merge branch 'shorter-names' into 'dev'
Shorten workflow names for log
See merge request epi2melabs/workflows/wf-transcriptomes!304
|
2026-05-26 20:12:38 +00:00 |
|
Sam Nicholls
|
efbe4d007c
|
Shorten workflow names for log
|
2026-05-26 20:12:38 +00:00 |
|
Natalia Garcia
|
e95b51016a
|
Merge branch 'tidy-up-schema-validation' into 'dev'
Tidy up schema validation [CW-7278]
See merge request epi2melabs/workflows/wf-transcriptomes!303
|
2026-05-26 18:42:12 +00:00 |
|
Natalia Garcia
|
6ca2f2f027
|
Tidy up schema validation [CW-7278]
|
2026-05-26 18:42:11 +00:00 |
|
Neil Horner
|
abf467e528
|
Merge branch '20_volcano_points_cw-7277' into 'dev'
Use all point for volcano and tables [CW-7277]
See merge request epi2melabs/workflows/wf-transcriptomes!300
|
2026-05-26 17:12:20 +00:00 |
|
Neil Horner
|
01e8652317
|
Use all point for volcano and tables [CW-7277]
|
2026-05-26 17:12:20 +00:00 |
|
Neil Horner
|
da5f78497e
|
Merge branch 'hier_low_data_cw-7275' into 'dev'
Clustering plots low data [CW-7275]
See merge request epi2melabs/workflows/wf-transcriptomes!298
|
2026-05-26 17:10:46 +00:00 |
|
Neil Horner
|
fa884c71c1
|
Clustering plots low data [CW-7275]
|
2026-05-26 17:10:46 +00:00 |
|
Rory Munro
|
a4b08414cb
|
Merge branch 'remove-bigwig' into 'dev'
Remove bigwig CI test
See merge request epi2melabs/workflows/wf-transcriptomes!302
|
2026-05-26 16:43:06 +00:00 |
|
Rory Munro
|
1192f09bc7
|
Remove bigwig CI test
|
2026-05-26 16:43:05 +00:00 |
|
Sarah Griffiths
|
c36404422e
|
Merge branch 'CW-7274' into 'dev'
Add force alignment option [CW-7274]
Closes CW-7274
See merge request epi2melabs/workflows/wf-transcriptomes!299
|
2026-05-26 14:44:50 +00:00 |
|
Sarah Griffiths
|
3ca4511b5b
|
Add force alignment option [CW-7274]
|
2026-05-26 14:44:50 +00:00 |
|
Rory Munro
|
6e72a4538c
|
Merge branch 'rmunro-dev-patch-42566' into 'dev'
Bump modkit sha version [CW-7273]
See merge request epi2melabs/workflows/wf-transcriptomes!297
|
2026-05-26 12:31:05 +00:00 |
|
Rory Munro
|
86d100c869
|
Bump modkit sha version [CW-7273]
|
2026-05-26 12:31:05 +00:00 |
|
Kiah McIntosh
|
3d49d01ff2
|
Merge branch 'tube-map-update' into 'dev'
Tube map update
See merge request epi2melabs/workflows/wf-transcriptomes!296
|
2026-05-26 12:27:16 +00:00 |
|
Kiah McIntosh
|
dff1353790
|
Tube map update
|
2026-05-26 12:27:15 +00:00 |
|
Sam Nicholls
|
6327eda710
|
Merge branch 'cw-7196' into 'dev'
Per-sample pileup counts [CW-7196]
See merge request epi2melabs/workflows/wf-transcriptomes!246
|
2026-05-26 09:52:39 +00:00 |
|
Sam Nicholls
|
175e6c9437
|
Per-sample pileup counts [CW-7196]
|
2026-05-26 09:52:38 +00:00 |
|
Sam Nicholls
|
c2656983d8
|
Merge branch 'exclude-data-artifacts' into 'dev'
CI : Exclude downloaded data artifacts
See merge request epi2melabs/workflows/wf-transcriptomes!293
|
2026-05-26 08:04:59 +00:00 |
|
Sam Nicholls
|
6c0a59581f
|
CI : Exclude downloaded data artifacts
|
2026-05-26 08:04:59 +00:00 |
|
Natalia Garcia
|
c87a5ce09c
|
Merge branch 'CW-7212' into 'dev'
Exclude non existent samples or samples without reads after ingress
Closes CW-7212
See merge request epi2melabs/workflows/wf-transcriptomes!255
|
2026-05-26 07:53:34 +00:00 |
|
Natalia Garcia
|
04ddfbf872
|
Exclude non existent samples or samples without reads after ingress
|
2026-05-26 07:53:34 +00:00 |
|
Sarah Griffiths
|
d416441e11
|
Merge branch 'CW-7271_missing_summary' into 'dev'
Add the missing annotation ref summary [CW-7271]
Closes CW-7271
See merge request epi2melabs/workflows/wf-transcriptomes!290
|
2026-05-22 17:05:56 +00:00 |
|
Neil Horner
|
020d555219
|
Add the missing annotation ref summary [CW-7271]
|
2026-05-22 17:05:56 +00:00 |
|
Kiah McIntosh
|
a5c25ec0a1
|
Merge branch 'tube-map-modkit' into 'dev'
Add modkit to tube map
See merge request epi2melabs/workflows/wf-transcriptomes!292
|
2026-05-22 16:33:01 +00:00 |
|
Kiah McIntosh
|
df2d333797
|
Add modkit to tube map
|
2026-05-22 16:33:01 +00:00 |
|
Kiah McIntosh
|
50b971604e
|
Merge branch 'cw-7238' into 'dev'
SQANTI3 results in report [CW-7238]
See merge request epi2melabs/workflows/wf-transcriptomes!271
|
2026-05-22 15:28:21 +00:00 |
|
Kiah McIntosh
|
1f456da61d
|
SQANTI3 results in report [CW-7238]
|
2026-05-22 15:28:21 +00:00 |
|