Sam Nicholls
|
0aa3ce3cad
|
Merge branch 'cw-7338' into 'dev'
Chunk RDS from disk if provided a path [CW-7338]
See merge request epi2melabs/workflows/wf-transcriptomes!334
|
2026-06-15 13:38:03 +00:00 |
|
Sam Nicholls
|
760ffa009e
|
Chunk RDS from disk if provided a path [CW-7338]
|
2026-06-15 13:38:02 +00:00 |
|
Sam Nicholls
|
3d04f3485a
|
Merge branch 'cw-7333' into 'dev'
Handle full join fail during bambu quant [CW-7333]
See merge request epi2melabs/workflows/wf-transcriptomes!333
|
2026-06-12 16:03:48 +00:00 |
|
Sam Nicholls
|
6099173238
|
Handle full join fail during bambu quant [CW-7333]
|
2026-06-12 16:03:48 +00:00 |
|
Sam Nicholls
|
94823e73d1
|
Use xlarge-highio
|
2026-06-09 12:08:19 +00:00 |
|
Sam Nicholls
|
fbb1529816
|
Use smoke_de as default CI test
|
2026-06-09 12:04:53 +00:00 |
|
Sam Nicholls
|
1fa032ae0e
|
Merge branch 'v200-rc2' into 'dev'
wf-transcriptomes v2.0.0
See merge request epi2melabs/workflows/wf-transcriptomes!320
|
2026-06-09 11:58:17 +00:00 |
|
Sam Nicholls
|
c21588761b
|
wf-transcriptomes v2.0.0
|
2026-06-09 11:58:17 +00:00 |
|
Sam Nicholls
|
f1dbc69191
|
Merge branch 'v2releasechanglog' into 'dev'
wf-transcriptomes 2.0.0-rc1
See merge request epi2melabs/workflows/wf-transcriptomes!315
|
2026-05-28 10:54:50 +00:00 |
|
Harrison Pirt
|
d7a0e96a44
|
wf-transcriptomes 2.0.0-rc1
|
2026-05-28 10:54:49 +00:00 |
|
Neil Horner
|
0b7dbdb294
|
Merge branch 'devon-docs' into 'dev'
Final README pass
See merge request epi2melabs/workflows/wf-transcriptomes!317
|
2026-05-28 10:21:37 +00:00 |
|
Chris Wright
|
957e57d87b
|
Final README pass
|
2026-05-28 10:21:37 +00:00 |
|
Sam Nicholls
|
274548f64f
|
Merge branch 'remove_demo' into 'dev'
Remove demo data to avoid breaking production demo
See merge request epi2melabs/workflows/wf-transcriptomes!318
|
2026-05-28 07:15:20 +00:00 |
|
Sarah Griffiths
|
30a9880bf7
|
Remove demo data to avoid breaking production demo
|
2026-05-28 07:15:20 +00:00 |
|
Sarah Griffiths
|
334173d613
|
Merge branch 'report-explain' into 'dev'
Add brief description to each section in report
See merge request epi2melabs/workflows/wf-transcriptomes!314
|
2026-05-27 16:17:22 +00:00 |
|
Sarah Griffiths
|
e17fec8bc0
|
Add brief description to each section in report
|
2026-05-27 16:17:22 +00:00 |
|
Sarah Griffiths
|
0129592acc
|
Merge branch 'tidy-params' into 'dev'
Tidy params
See merge request epi2melabs/workflows/wf-transcriptomes!283
|
2026-05-27 15:40:53 +00:00 |
|
Sam Nicholls
|
bca0f01bf6
|
Tidy params
|
2026-05-27 15:40:53 +00:00 |
|
Neil Horner
|
26d830a916
|
Merge branch 'condition_report_fix' into 'dev'
Condition report fix [CW-7283]
See merge request epi2melabs/workflows/wf-transcriptomes!313
|
2026-05-27 15:05:18 +00:00 |
|
Neil Horner
|
3e53b755cc
|
Condition report fix [CW-7283]
|
2026-05-27 15:05:18 +00:00 |
|
Sarah Griffiths
|
541de0c1f9
|
Merge branch 'stop-demo-release' into 'dev'
Avoid publishing demo for transcriptomes
See merge request epi2melabs/workflows/wf-transcriptomes!316
|
2026-05-27 14:37:54 +00:00 |
|
Sarah Griffiths
|
ef08219e11
|
Avoid publishing demo for transcriptomes
|
2026-05-27 14:37:53 +00:00 |
|
Neil Horner
|
10b2013b6a
|
Merge branch 'transcriptome_table_order' into 'dev'
Report minor fixes [CW-7281]
See merge request epi2melabs/workflows/wf-transcriptomes!309
|
2026-05-27 13:20:41 +00:00 |
|
Neil Horner
|
722d736f24
|
Report minor fixes [CW-7281]
|
2026-05-27 13:20:41 +00:00 |
|
Sam Nicholls
|
9cba80832d
|
Merge branch 'unnecessary-igv' into 'dev'
Publish refs for IGV only when necessary [CW-7280]
See merge request epi2melabs/workflows/wf-transcriptomes!306
|
2026-05-27 12:24:08 +00:00 |
|
Sam Nicholls
|
262f49944e
|
Publish refs for IGV only when necessary [CW-7280]
|
2026-05-27 12:24:07 +00:00 |
|
Natalia Garcia
|
c96be955b5
|
Merge branch 'template-updates-sorting' into 'dev'
Template updates: sort threads param
See merge request epi2melabs/workflows/wf-transcriptomes!311
|
2026-05-27 11:59:12 +00:00 |
|
Natalia Garcia
|
531975c004
|
Template updates: sort threads param
|
2026-05-27 11:59:11 +00:00 |
|
Natalia Garcia
|
d73b9a2721
|
Merge branch 'template-updates2' into 'dev'
Template updates: reference
See merge request epi2melabs/workflows/wf-transcriptomes!310
|
2026-05-27 10:00:41 +00:00 |
|
Natalia Garcia
|
9d59c6b902
|
Template updates: reference
|
2026-05-27 10:00:40 +00:00 |
|
Natalia Garcia
|
33ad57cdaa
|
Merge branch 'CW-7279' into 'dev'
Use mode copy in publishDir [CW-7279]
Closes CW-7279
See merge request epi2melabs/workflows/wf-transcriptomes!308
|
2026-05-27 09:29:30 +00:00 |
|
Natalia Garcia
|
7e301319fc
|
Use mode copy in publishDir [CW-7279]
|
2026-05-27 09:29:30 +00:00 |
|
Sam Nicholls
|
dda764f48c
|
Merge branch 'cw-7196-b' into 'dev'
Per-sample mod summary
See merge request epi2melabs/workflows/wf-transcriptomes!294
|
2026-05-27 08:11:02 +00:00 |
|
Sam Nicholls
|
4bc3cf727f
|
Per-sample mod summary
|
2026-05-27 08:11:02 +00:00 |
|
Natalia Garcia
|
9d684eeb29
|
Merge branch 'use-extra-validation' into 'dev'
Check is a valid sample sheet use the extensive validation [CW-7210]
See merge request epi2melabs/workflows/wf-transcriptomes!272
|
2026-05-27 08:10:04 +00:00 |
|
Natalia Garcia
|
0ae50f9a35
|
Check is a valid sample sheet use the extensive validation [CW-7210]
|
2026-05-27 08:10:04 +00:00 |
|
Sam Nicholls
|
74cbe196b2
|
Merge branch 'fix-ci-test-2' into 'dev'
Restore modkit test with smaller gtf, fix join error
See merge request epi2melabs/workflows/wf-transcriptomes!305
|
2026-05-26 20:12:45 +00:00 |
|
Sam Nicholls
|
b6f9efd9ae
|
Restore modkit test with smaller gtf, fix join error
|
2026-05-26 20:12:45 +00:00 |
|
Sam Nicholls
|
e28be80e1a
|
Merge branch 'shorter-names' into 'dev'
Shorten workflow names for log
See merge request epi2melabs/workflows/wf-transcriptomes!304
|
2026-05-26 20:12:38 +00:00 |
|
Sam Nicholls
|
efbe4d007c
|
Shorten workflow names for log
|
2026-05-26 20:12:38 +00:00 |
|
Natalia Garcia
|
e95b51016a
|
Merge branch 'tidy-up-schema-validation' into 'dev'
Tidy up schema validation [CW-7278]
See merge request epi2melabs/workflows/wf-transcriptomes!303
|
2026-05-26 18:42:12 +00:00 |
|
Natalia Garcia
|
6ca2f2f027
|
Tidy up schema validation [CW-7278]
|
2026-05-26 18:42:11 +00:00 |
|
Neil Horner
|
abf467e528
|
Merge branch '20_volcano_points_cw-7277' into 'dev'
Use all point for volcano and tables [CW-7277]
See merge request epi2melabs/workflows/wf-transcriptomes!300
|
2026-05-26 17:12:20 +00:00 |
|
Neil Horner
|
01e8652317
|
Use all point for volcano and tables [CW-7277]
|
2026-05-26 17:12:20 +00:00 |
|
Neil Horner
|
da5f78497e
|
Merge branch 'hier_low_data_cw-7275' into 'dev'
Clustering plots low data [CW-7275]
See merge request epi2melabs/workflows/wf-transcriptomes!298
|
2026-05-26 17:10:46 +00:00 |
|
Neil Horner
|
fa884c71c1
|
Clustering plots low data [CW-7275]
|
2026-05-26 17:10:46 +00:00 |
|
Rory Munro
|
a4b08414cb
|
Merge branch 'remove-bigwig' into 'dev'
Remove bigwig CI test
See merge request epi2melabs/workflows/wf-transcriptomes!302
|
2026-05-26 16:43:06 +00:00 |
|
Rory Munro
|
1192f09bc7
|
Remove bigwig CI test
|
2026-05-26 16:43:05 +00:00 |
|
Sarah Griffiths
|
c36404422e
|
Merge branch 'CW-7274' into 'dev'
Add force alignment option [CW-7274]
Closes CW-7274
See merge request epi2melabs/workflows/wf-transcriptomes!299
|
2026-05-26 14:44:50 +00:00 |
|
Sarah Griffiths
|
3ca4511b5b
|
Add force alignment option [CW-7274]
|
2026-05-26 14:44:50 +00:00 |
|