Sarah Griffiths
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2be5b01cc8
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align parameters
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2021-09-10 13:59:43 +00:00 |
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Sarah Griffiths
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c8c79a6a36
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Merge branch 'CW-244' into 'dev'
CW-244 optional report name
Closes CW-244
See merge request epi2melabs/workflow-containers/wf-template!23
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2021-09-09 13:39:17 +00:00 |
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Sarah Griffiths
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167deee265
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CW-244 optional report name
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2021-09-09 13:39:17 +00:00 |
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Sarah Griffiths
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d030e654e9
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Merge branch 'CW-247' into 'dev'
CW-247 error on no fastq
Closes CW-247
See merge request epi2melabs/workflow-containers/wf-template!22
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2021-09-09 10:15:34 +00:00 |
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Sarah Griffiths
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fb0230358f
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Update fastqingress.nf to give error message if no fastq files
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2021-09-08 13:42:51 +00:00 |
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Thomas Rich
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62425e1d89
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Merge branch 'add-params-table' into 'dev'
Add params table in report and process
See merge request epi2melabs/workflow-containers/wf-template!20
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2021-08-19 14:48:39 +00:00 |
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Amber Wright
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fe03715e6b
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Merge branch 'duplicate_dockerignore_entry' into 'dev'
Update .dockerignore duplicate entry
See merge request epi2melabs/workflow-containers/wf-template!21
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2021-07-29 13:23:39 +00:00 |
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Amber Wright
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3ac6cc9768
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Update .dockerignore duplicate entry
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2021-07-29 13:18:18 +00:00 |
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Karhide
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ca5111b287
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Add params table in report and process
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2021-07-29 12:32:19 +01:00 |
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Chris Wright
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ab1706603b
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Bump version
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2021-07-28 17:30:27 +00:00 |
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Chris Wright
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621e910c5d
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Merge branch 'mamba' into 'dev'
Switch conda profile to use mamba
See merge request epi2melabs/workflow-containers/wf-template!19
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2021-07-27 13:45:22 +00:00 |
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Chris Wright
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fcc1394600
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Switch conda profile to use mamba
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2021-07-27 11:19:11 +01:00 |
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Chris Wright
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0f19083e57
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Bump default BASEIMAGE
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2021-07-26 11:18:43 +00:00 |
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Chris Wright
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16f41f778f
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Update LICENSE
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2021-07-26 09:51:41 +00:00 |
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Chris Wright
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b7fbb9d1fe
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Merge branch 'dev' into makesmaller
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2021-07-23 17:39:26 +01:00 |
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Chris Wright
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8afc348434
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Fix version file passing
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2021-07-23 17:34:46 +01:00 |
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Chris Wright
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635b18121b
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Fix typos
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2021-07-23 17:02:03 +01:00 |
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Chris Wright
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b61a1c0f5f
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Update version reporting
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2021-07-23 16:49:32 +01:00 |
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Chris Wright
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eef235b8ce
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Optimise image size a little
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2021-07-22 17:37:02 +01:00 |
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Chris Wright
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527307b0e5
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Merge branch 'stripreadme' into 'dev'
Cut down readme to workflow particulars
See merge request epi2melabs/workflow-containers/wf-template!15
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2021-07-22 14:35:11 +00:00 |
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Chris Wright
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49ba6effd6
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Merge branch 'samples' into 'dev'
add fastqingress module
See merge request epi2melabs/workflow-containers/wf-template!14
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2021-07-22 14:00:50 +00:00 |
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Chris Wright
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48a985f7c3
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Cut down readme to workflow particulars
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2021-07-22 13:55:44 +01:00 |
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Chris Wright
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2a1ff88cc7
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add fastqingress module
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2021-07-12 21:15:03 +01:00 |
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Chris Wright
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ee30d5bb7c
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Merge branch 'testnewmamba' into 'dev'
Testnewmamba
See merge request epi2melabs/workflow-containers/wf-template!13
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2021-06-30 16:59:26 +00:00 |
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Chris Wright
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feb1c5e9fd
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Testnewmamba
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2021-06-30 16:59:26 +00:00 |
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Chris Wright
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c11f0f214b
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Update nextflow.config, CHANGELOG.md files
|
2021-05-17 15:21:42 +01:00 |
|
Chris Wright
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7e013608f9
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Remove macos run
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2021-04-29 16:16:33 +01:00 |
|
Chris Wright
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57ff953621
|
mac docker
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2021-04-29 16:04:48 +01:00 |
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Chris Wright
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0e12112439
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Merge branch 'versions' into 'dev'
Add version report
See merge request epi2melabs/workflow-containers/wf-template!12
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2021-04-29 14:52:21 +01:00 |
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Chris Wright
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c65c752277
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Add version report
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2021-04-29 14:52:21 +01:00 |
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Chris Wright
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6ee6f171d8
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Tidy up and add mock optional file example
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2021-04-13 11:46:44 +01:00 |
|
Chris Wright
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62afff20c4
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Add aws batch profile
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2021-03-29 18:10:53 +01:00 |
|
Chris Wright
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36cd674fa2
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Simple version bump
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2021-03-24 13:36:58 +00:00 |
|
Chris Wright
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d6233c33a3
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prep0.0.3
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2021-03-23 17:34:02 +00:00 |
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Chris Wright
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93d24b8fa1
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Merge branch 'report' into 'dev'
rename report
See merge request epi2melabs/workflow-containers/wf-template!11
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2021-03-23 16:18:53 +00:00 |
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Chris Wright
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d1901bb16f
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rename report
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2021-03-23 16:18:53 +00:00 |
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Chris Wright
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e8e584d451
|
Set fastq option straight
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2021-03-19 11:22:10 +00:00 |
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Chris Wright
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4a72aee687
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Merge branch 'newtemp' into 'dev'
Newtemp
See merge request epi2melabs/workflow-containers/wf-template!10
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2021-03-17 12:19:47 +00:00 |
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Chris Wright
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c149382e3c
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Add comments to ci
|
2021-03-17 12:16:47 +00:00 |
|
Chris Wright
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67d98b9561
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Add comments to ci
|
2021-03-17 11:28:56 +00:00 |
|
Chris Wright
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3f99c88a9d
|
Clean up bin
|
2021-03-17 11:24:07 +00:00 |
|
Chris Wright
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fba94dcd8f
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Switch to variable based command
|
2021-03-17 11:06:24 +00:00 |
|
Chris Wright
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f7aa07209b
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Merge branch 'citemplate' into 'dev'
Citemplate
See merge request epi2melabs/workflow-containers/wf-template!8
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2021-03-16 17:34:15 +00:00 |
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Chris Wright
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0511706888
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Citemplate
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2021-03-16 17:34:15 +00:00 |
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Chris Wright
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576e25306e
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Update .gitlab-ci.yml
|
2021-03-16 15:37:31 +00:00 |
|
Chris Wright
|
d74cd3d048
|
Update .gitlab-ci.yml
|
2021-03-16 14:41:42 +00:00 |
|
Chris Wright
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ffb895ef7e
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Merge branch 'citemplate' into 'dev'
Switch to ci template
See merge request epi2melabs/workflow-containers/wf-template!7
|
2021-03-16 12:58:57 +00:00 |
|
Chris Wright
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e829f60d95
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Switch to ci template
|
2021-03-16 12:53:44 +00:00 |
|
Chris Wright
|
d11e57f286
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Update changelog
|
2021-03-15 18:17:06 +00:00 |
|
Chris Wright
|
99a68e4c36
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Bump wfversion
|
2021-03-15 18:15:26 +00:00 |
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