Natalia Garcia
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33ad57cdaa
|
Merge branch 'CW-7279' into 'dev'
Use mode copy in publishDir [CW-7279]
Closes CW-7279
See merge request epi2melabs/workflows/wf-transcriptomes!308
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2026-05-27 09:29:30 +00:00 |
|
Natalia Garcia
|
7e301319fc
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Use mode copy in publishDir [CW-7279]
|
2026-05-27 09:29:30 +00:00 |
|
Sam Nicholls
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dda764f48c
|
Merge branch 'cw-7196-b' into 'dev'
Per-sample mod summary
See merge request epi2melabs/workflows/wf-transcriptomes!294
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2026-05-27 08:11:02 +00:00 |
|
Sam Nicholls
|
4bc3cf727f
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Per-sample mod summary
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2026-05-27 08:11:02 +00:00 |
|
Natalia Garcia
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9d684eeb29
|
Merge branch 'use-extra-validation' into 'dev'
Check is a valid sample sheet use the extensive validation [CW-7210]
See merge request epi2melabs/workflows/wf-transcriptomes!272
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2026-05-27 08:10:04 +00:00 |
|
Natalia Garcia
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0ae50f9a35
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Check is a valid sample sheet use the extensive validation [CW-7210]
|
2026-05-27 08:10:04 +00:00 |
|
Sam Nicholls
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74cbe196b2
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Merge branch 'fix-ci-test-2' into 'dev'
Restore modkit test with smaller gtf, fix join error
See merge request epi2melabs/workflows/wf-transcriptomes!305
|
2026-05-26 20:12:45 +00:00 |
|
Sam Nicholls
|
b6f9efd9ae
|
Restore modkit test with smaller gtf, fix join error
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2026-05-26 20:12:45 +00:00 |
|
Sam Nicholls
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e28be80e1a
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Merge branch 'shorter-names' into 'dev'
Shorten workflow names for log
See merge request epi2melabs/workflows/wf-transcriptomes!304
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2026-05-26 20:12:38 +00:00 |
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Sam Nicholls
|
efbe4d007c
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Shorten workflow names for log
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2026-05-26 20:12:38 +00:00 |
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Natalia Garcia
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e95b51016a
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Merge branch 'tidy-up-schema-validation' into 'dev'
Tidy up schema validation [CW-7278]
See merge request epi2melabs/workflows/wf-transcriptomes!303
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2026-05-26 18:42:12 +00:00 |
|
Natalia Garcia
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6ca2f2f027
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Tidy up schema validation [CW-7278]
|
2026-05-26 18:42:11 +00:00 |
|
Neil Horner
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abf467e528
|
Merge branch '20_volcano_points_cw-7277' into 'dev'
Use all point for volcano and tables [CW-7277]
See merge request epi2melabs/workflows/wf-transcriptomes!300
|
2026-05-26 17:12:20 +00:00 |
|
Neil Horner
|
01e8652317
|
Use all point for volcano and tables [CW-7277]
|
2026-05-26 17:12:20 +00:00 |
|
Neil Horner
|
da5f78497e
|
Merge branch 'hier_low_data_cw-7275' into 'dev'
Clustering plots low data [CW-7275]
See merge request epi2melabs/workflows/wf-transcriptomes!298
|
2026-05-26 17:10:46 +00:00 |
|
Neil Horner
|
fa884c71c1
|
Clustering plots low data [CW-7275]
|
2026-05-26 17:10:46 +00:00 |
|
Rory Munro
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a4b08414cb
|
Merge branch 'remove-bigwig' into 'dev'
Remove bigwig CI test
See merge request epi2melabs/workflows/wf-transcriptomes!302
|
2026-05-26 16:43:06 +00:00 |
|
Rory Munro
|
1192f09bc7
|
Remove bigwig CI test
|
2026-05-26 16:43:05 +00:00 |
|
Sarah Griffiths
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c36404422e
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Merge branch 'CW-7274' into 'dev'
Add force alignment option [CW-7274]
Closes CW-7274
See merge request epi2melabs/workflows/wf-transcriptomes!299
|
2026-05-26 14:44:50 +00:00 |
|
Sarah Griffiths
|
3ca4511b5b
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Add force alignment option [CW-7274]
|
2026-05-26 14:44:50 +00:00 |
|
Rory Munro
|
6e72a4538c
|
Merge branch 'rmunro-dev-patch-42566' into 'dev'
Bump modkit sha version [CW-7273]
See merge request epi2melabs/workflows/wf-transcriptomes!297
|
2026-05-26 12:31:05 +00:00 |
|
Rory Munro
|
86d100c869
|
Bump modkit sha version [CW-7273]
|
2026-05-26 12:31:05 +00:00 |
|
Kiah McIntosh
|
3d49d01ff2
|
Merge branch 'tube-map-update' into 'dev'
Tube map update
See merge request epi2melabs/workflows/wf-transcriptomes!296
|
2026-05-26 12:27:16 +00:00 |
|
Kiah McIntosh
|
dff1353790
|
Tube map update
|
2026-05-26 12:27:15 +00:00 |
|
Sam Nicholls
|
6327eda710
|
Merge branch 'cw-7196' into 'dev'
Per-sample pileup counts [CW-7196]
See merge request epi2melabs/workflows/wf-transcriptomes!246
|
2026-05-26 09:52:39 +00:00 |
|
Sam Nicholls
|
175e6c9437
|
Per-sample pileup counts [CW-7196]
|
2026-05-26 09:52:38 +00:00 |
|
Sam Nicholls
|
c2656983d8
|
Merge branch 'exclude-data-artifacts' into 'dev'
CI : Exclude downloaded data artifacts
See merge request epi2melabs/workflows/wf-transcriptomes!293
|
2026-05-26 08:04:59 +00:00 |
|
Sam Nicholls
|
6c0a59581f
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CI : Exclude downloaded data artifacts
|
2026-05-26 08:04:59 +00:00 |
|
Natalia Garcia
|
c87a5ce09c
|
Merge branch 'CW-7212' into 'dev'
Exclude non existent samples or samples without reads after ingress
Closes CW-7212
See merge request epi2melabs/workflows/wf-transcriptomes!255
|
2026-05-26 07:53:34 +00:00 |
|
Natalia Garcia
|
04ddfbf872
|
Exclude non existent samples or samples without reads after ingress
|
2026-05-26 07:53:34 +00:00 |
|
Sarah Griffiths
|
d416441e11
|
Merge branch 'CW-7271_missing_summary' into 'dev'
Add the missing annotation ref summary [CW-7271]
Closes CW-7271
See merge request epi2melabs/workflows/wf-transcriptomes!290
|
2026-05-22 17:05:56 +00:00 |
|
Neil Horner
|
020d555219
|
Add the missing annotation ref summary [CW-7271]
|
2026-05-22 17:05:56 +00:00 |
|
Kiah McIntosh
|
a5c25ec0a1
|
Merge branch 'tube-map-modkit' into 'dev'
Add modkit to tube map
See merge request epi2melabs/workflows/wf-transcriptomes!292
|
2026-05-22 16:33:01 +00:00 |
|
Kiah McIntosh
|
df2d333797
|
Add modkit to tube map
|
2026-05-22 16:33:01 +00:00 |
|
Kiah McIntosh
|
50b971604e
|
Merge branch 'cw-7238' into 'dev'
SQANTI3 results in report [CW-7238]
See merge request epi2melabs/workflows/wf-transcriptomes!271
|
2026-05-22 15:28:21 +00:00 |
|
Kiah McIntosh
|
1f456da61d
|
SQANTI3 results in report [CW-7238]
|
2026-05-22 15:28:21 +00:00 |
|
Neil Horner
|
845c03f7f5
|
Merge branch 'hier_plots' into 'dev'
[CW-7211] Hierarchical plot + PCA
See merge request epi2melabs/workflows/wf-transcriptomes!251
|
2026-05-22 14:34:50 +00:00 |
|
Neil Horner
|
5823f04809
|
[CW-7211] Hierarchical plot + PCA
|
2026-05-22 14:34:50 +00:00 |
|
Natalia Garcia
|
3204d24045
|
Merge branch 'template-updates' into 'dev'
Use new sample sheet validation
See merge request epi2melabs/workflows/wf-transcriptomes!289
|
2026-05-22 12:58:17 +00:00 |
|
Natalia Garcia
|
2cfc7b2549
|
Use new sample sheet validation
|
2026-05-22 12:58:17 +00:00 |
|
Neil Horner
|
1b3155d591
|
Merge branch 'report_glow_up_2' into 'dev'
Report glow up 2 [CW-7207]
See merge request epi2melabs/workflows/wf-transcriptomes!279
|
2026-05-22 11:55:44 +00:00 |
|
Neil Horner
|
f45056c438
|
Report glow up 2 [CW-7207]
|
2026-05-22 11:55:44 +00:00 |
|
Kiah McIntosh
|
8c6196ddc1
|
Merge branch 'cw-7270-readme' into 'dev'
Update readme for alignment and ingress outputs [CW-7270]
See merge request epi2melabs/workflows/wf-transcriptomes!288
|
2026-05-22 10:44:40 +00:00 |
|
Kiah McIntosh
|
90cc4cf73b
|
Update readme for alignment and ingress outputs [CW-7270]
|
2026-05-22 10:44:40 +00:00 |
|
Sam Nicholls
|
89626ab016
|
Merge branch 'gene_names' into 'dev'
Add gene name to TSV outputs [CW-7160]
See merge request epi2melabs/workflows/wf-transcriptomes!274
|
2026-05-22 10:23:21 +00:00 |
|
Neil Horner
|
d9c9cc6765
|
Add gene name to TSV outputs [CW-7160]
|
2026-05-22 10:23:21 +00:00 |
|
Rory Munro
|
a86d325393
|
Merge branch 'override-singularity' into 'dev'
Override singularity CI
See merge request epi2melabs/workflows/wf-transcriptomes!287
|
2026-05-22 10:15:55 +00:00 |
|
Rory Munro
|
bfebfaa4b3
|
Override singularity CI
|
2026-05-22 10:15:55 +00:00 |
|
Sarah Griffiths
|
dac0a6ef01
|
Merge branch 'CW-7261-b' into 'dev'
Annotation quant issues test [CW-7261]
Closes CW-7261
See merge request epi2melabs/workflows/wf-transcriptomes!284
|
2026-05-22 09:38:34 +00:00 |
|
Sarah Griffiths
|
7b94eb2ca0
|
Annotation quant issues test [CW-7261]
|
2026-05-22 09:38:33 +00:00 |
|