Neil Horner
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350cb8d23b
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Merge branch 'missing_file_CW-5556' into 'dev'
Fix overwritten DGE results file
See merge request epi2melabs/workflows/wf-transcriptomes!199
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2025-02-18 17:05:45 +00:00 |
|
Neil Horner
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b62722751f
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Fix overwritten DGE results file
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2025-02-18 17:05:45 +00:00 |
|
Natalia Garcia
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205ff5ca59
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Merge branch 'cw-5563-wf-transcriptomes' into 'dev'
Update workflow tags [CW-5563]
See merge request epi2melabs/workflows/wf-transcriptomes!201
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2025-02-13 23:39:09 +00:00 |
|
Natalia Garcia
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122ad8403a
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Update workflow tags [CW-5563]
|
2025-02-13 23:39:09 +00:00 |
|
Kiah McIntosh
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428e337e22
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Merge branch 'cw-3398' into 'dev'
Use args for R script inputs [CW-3398]
See merge request epi2melabs/workflows/wf-transcriptomes!200
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2025-02-07 08:42:49 +00:00 |
|
Kiah McIntosh
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eab8ef1efe
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Use args for R script inputs [CW-3398]
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2025-02-07 08:42:49 +00:00 |
|
Neil Horner
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91a514abd2
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Merge branch 'schema_updates_CW-5529' into 'dev'
Update schema
See merge request epi2melabs/workflows/wf-transcriptomes!197
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2025-01-23 10:59:32 +00:00 |
|
Neil Horner
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e534921877
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Update schema
|
2025-01-23 10:59:31 +00:00 |
|
Matt Parker
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632a8f85a2
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Merge branch 'split_bam_mem_CW-5352' into 'dev'
Update memory for split_bam and build_minimap_index_transcriptome
Closes CW-5352
See merge request epi2melabs/workflows/wf-transcriptomes!195
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2025-01-03 17:06:38 +00:00 |
|
Neil Horner
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937a41f2cc
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Update memory for split_bam and build_minimap_index_transcriptome
|
2025-01-03 17:06:38 +00:00 |
|
Matt Parker
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a33f3b967c
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Merge branch 'bump_v1.6.1' into 'dev'
bump version
See merge request epi2melabs/workflows/wf-transcriptomes!196
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2025-01-03 12:44:09 +00:00 |
|
Neil Horner
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39ef6ab16a
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bump version
|
2025-01-03 12:44:08 +00:00 |
|
Neil Horner
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724a6515ea
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Merge branch 'empty_gff_CW-5438' into 'dev'
Empty GFF bug CW-5438
See merge request epi2melabs/workflows/wf-transcriptomes!194
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2024-12-18 15:01:34 +00:00 |
|
Neil Horner
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0ec44d03bd
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Empty GFF bug CW-5438
|
2024-12-18 15:01:33 +00:00 |
|
Matt Parker
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74c19f1ea5
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Merge branch 'bump_v1.6.0' into 'dev'
Bump V1.6.0
See merge request epi2melabs/workflows/wf-transcriptomes!193
|
2024-12-13 13:11:56 +00:00 |
|
Neil Horner
|
7ca3110648
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Bump V1.6.0
|
2024-12-13 13:11:56 +00:00 |
|
Neil Horner
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cb00ede5d8
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Merge branch 'CW-5398' into 'dev'
Access to undefined channel output bug CW-5398
Closes CW-5398
See merge request epi2melabs/workflows/wf-transcriptomes!192
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2024-12-13 11:51:07 +00:00 |
|
Neil Horner
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c8c5922965
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Access to undefined channel output bug CW-5398
|
2024-12-13 11:51:04 +00:00 |
|
Neil Horner
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4c46f88f00
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Merge branch 'gene_assignment_CW-5416' into 'dev'
Account for stringtie multigene transcript artefacts
Closes CW-5369
See merge request epi2melabs/workflows/wf-transcriptomes!189
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2024-12-12 14:30:32 +00:00 |
|
Neil Horner
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0a5c39cdf4
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Account for stringtie multigene transcript artefacts
|
2024-12-12 14:30:31 +00:00 |
|
Neil Horner
|
112e87ad94
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Merge branch 'template_2024_12_02' into 'dev'
template update
See merge request epi2melabs/workflows/wf-transcriptomes!191
|
2024-12-05 10:26:26 +00:00 |
|
Neil Horner
|
d38c7f3661
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template update
|
2024-12-05 10:26:25 +00:00 |
|
Neil Horner
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474c0fae3b
|
Merge branch 'template_update_dec24' into 'dev'
Update permissions
See merge request epi2melabs/workflows/wf-transcriptomes!190
|
2024-12-02 12:55:51 +00:00 |
|
Neil Horner
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624c16a3b1
|
Update permissions
|
2024-12-02 12:55:51 +00:00 |
|
Sarah Griffiths
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b3fbb1117c
|
Merge branch 'CW-3930' into 'dev'
Actually output the dexseq file
Closes CW-3930
See merge request epi2melabs/workflows/wf-transcriptomes!188
|
2024-11-05 11:51:40 +00:00 |
|
Sarah Griffiths
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465d060933
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Actually output the dexseq file
|
2024-11-05 11:51:40 +00:00 |
|
Neil Horner
|
45a717aaf3
|
Merge branch 'bokehreport_CW-3077' into 'dev'
Update report CW-3077
See merge request epi2melabs/workflows/wf-transcriptomes!168
|
2024-10-25 15:18:05 +00:00 |
|
Neil Horner
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5c4780a1b2
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Update report CW-3077
|
2024-10-25 15:18:05 +00:00 |
|
Sarah Griffiths
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d2ddad27a2
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Merge branch 'CW-4886' into 'dev'
Tidy de analysis
Closes CW-4886
See merge request epi2melabs/workflows/wf-transcriptomes!185
|
2024-09-16 09:26:13 +00:00 |
|
Sarah Griffiths
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d83807f38d
|
Tidy de analysis
|
2024-09-16 09:26:12 +00:00 |
|
Sam Nicholls
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beb094ea85
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Merge branch 'CW-4613-b' into 'dev'
IGV absolute paths fix
Closes CW-4613
See merge request epi2melabs/workflows/wf-transcriptomes!184
|
2024-09-13 11:48:16 +00:00 |
|
Sarah Griffiths
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be1d322287
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IGV absolute paths fix
|
2024-09-13 11:48:16 +00:00 |
|
Sarah Griffiths
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ce4bfa9a30
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Merge branch 'template-updates' into 'dev'
Template updates
See merge request epi2melabs/workflows/wf-transcriptomes!183
|
2024-09-11 12:47:01 +00:00 |
|
Sarah Griffiths
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7ced52c05b
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Template updates
|
2024-09-11 12:47:01 +00:00 |
|
Sam Nicholls
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31085d0fe4
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Merge branch 'cw-4886' into 'dev'
Output dtu_plots to local work dir then mv [CW-4886]
See merge request epi2melabs/workflows/wf-transcriptomes!182
|
2024-09-09 18:41:18 +00:00 |
|
Sam Nicholls
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46363987aa
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Output dtu_plots to local work dir then mv [CW-4886]
|
2024-09-09 18:41:17 +00:00 |
|
Sarah Griffiths
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f8e08baed1
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Merge branch 'CW-4613' into 'dev'
CW-4613 IGV config
Closes CW-4613
See merge request epi2melabs/workflows/wf-transcriptomes!181
|
2024-09-06 09:27:56 +00:00 |
|
Sarah Griffiths
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14fe76dabc
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CW-4613 IGV config
|
2024-09-06 09:27:56 +00:00 |
|
Neil Horner
|
7287fdcdb1
|
Merge branch 'v1.3.0_fix' into 'dev'
Missed v from version
See merge request epi2melabs/workflows/wf-transcriptomes!180
|
2024-08-08 13:43:26 +00:00 |
|
Neil Horner
|
f62ec6c127
|
Missed v from version
|
2024-08-08 13:08:59 +01:00 |
|
Neil Horner
|
d7bb5c80f7
|
Merge branch 'pychopper_primer_CW_4184' into 'dev'
Add new cDNA kits
See merge request epi2melabs/workflows/wf-transcriptomes!177
|
2024-08-07 11:31:15 +00:00 |
|
Neil Horner
|
abc40d9015
|
Add new cDNA kits
|
2024-08-07 11:31:14 +00:00 |
|
Sam Nicholls
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40456d676b
|
Merge branch 'remove_jaffal_CW-4552' into 'dev'
Remove fusion detection [CW-4552]
Closes CW-4552
See merge request epi2melabs/workflows/wf-transcriptomes!179
|
2024-08-06 20:20:20 +00:00 |
|
Neil Horner
|
0200514536
|
Remove fusion detection [CW-4552]
|
2024-08-06 20:20:19 +00:00 |
|
Sam Nicholls
|
a037538744
|
Merge branch 'template_2024-07-10' into 'dev'
template update 2024-07-10
See merge request epi2melabs/workflows/wf-transcriptomes!178
|
2024-07-26 08:34:05 +00:00 |
|
Neil Horner
|
0f4eee002a
|
template update 2024-07-10
|
2024-07-26 08:34:05 +00:00 |
|
Neil Horner
|
f01006c302
|
Merge branch 'v1.2.1' into 'dev'
Bump v1.2.1
See merge request epi2melabs/workflows/wf-transcriptomes!176
|
2024-07-04 14:48:31 +00:00 |
|
Neil Horner
|
a5699b2945
|
Bump v1.2.1
|
2024-07-04 14:48:30 +00:00 |
|
Neil Horner
|
3d5c4c38eb
|
Merge branch 'template_update_0624' into 'dev'
Template update
See merge request epi2melabs/workflows/wf-transcriptomes!175
|
2024-07-04 13:25:20 +00:00 |
|
Neil Horner
|
c662293317
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Template update
|
2024-06-27 16:13:55 +01:00 |
|