Neil Horner
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0200514536
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Remove fusion detection [CW-4552]
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2024-08-06 20:20:19 +00:00 |
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Sarah Griffiths
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57c0f5b303
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Handle annotations with no strand CW-3998
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2024-06-25 13:08:32 +00:00 |
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Neil Horner
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cfa41f16d0
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BAM input CW-3512
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2024-06-04 09:25:31 +00:00 |
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Sarah Griffiths
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4bb02049ec
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Resource updates
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2024-02-12 10:20:02 +00:00 |
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Sarah Griffiths
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1be77ba77f
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CW-3075 improve counts output files
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2024-02-02 10:38:50 +00:00 |
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Sarah Griffiths
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35dc9dd722
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pychopper parameters clear up
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2023-12-04 21:12:57 +00:00 |
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Sarah Griffiths
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045a077fe1
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docs update
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2023-12-01 12:36:33 +00:00 |
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Sarah Griffiths
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e1b2a08918
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control for sample sheet
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2023-10-25 10:41:08 +00:00 |
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Sarah Griffiths
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f683d44411
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CW-2769 remove denovo
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2023-09-27 08:02:00 +00:00 |
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Neil Horner
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f86024c4f8
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Removed reference to condition sheet
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2023-09-20 11:05:09 +01:00 |
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Sarah Griffiths
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4065a4d82f
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params update defaults
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2023-09-06 08:00:10 +00:00 |
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Sarah Griffiths
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d535778497
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add titles
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2023-08-08 11:18:15 +00:00 |
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Sarah Griffiths
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ec3c346fd8
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fix and test for files with no gene id in attributes
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2023-07-26 18:14:00 +00:00 |
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Sarah Griffiths
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df6c9a2a31
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CW-2313 remove condition sheet requirement
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2023-07-10 16:45:32 +00:00 |
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Sam Nicholls
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8d6545b462
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Hide jaffal_dir option
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2023-07-04 11:31:51 +01:00 |
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Sarah Griffiths
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79d5821c14
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CW-2307 ref_transcriptome default not null
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2023-06-28 15:19:41 +00:00 |
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Sarah Griffiths
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ab275b6440
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CW-1920-Annotation-file-types
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2023-05-31 20:48:35 +00:00 |
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Sam Nicholls
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63bef44dcc
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Add AWS demo url configuration
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2023-05-16 14:59:53 +01:00 |
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Sarah Griffiths
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8053448d61
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CW-1882 CSV
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2023-04-04 11:54:35 +00:00 |
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Neil Horner
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d8d8a791af
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Glue
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2023-02-24 14:42:57 +00:00 |
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Julian Libiseller-Egger
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136ece6a90
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update manifest description to match workflow card in app
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2022-12-05 21:04:41 +00:00 |
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Sarah Griffiths
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d3e48d4278
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tag
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2022-12-01 21:41:36 +00:00 |
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Sarah Griffiths
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43e746f0ea
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schema updates
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2022-12-01 21:05:01 +00:00 |
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Sarah Griffiths
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5477e721a2
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CW-1170 Fix failed to plot
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2022-11-16 20:11:44 +00:00 |
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Sarah Griffiths
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cd1f97de4e
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CW-1162 option to run DE without assembly transcriptome
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2022-11-16 12:16:38 +00:00 |
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Sarah Griffiths
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0758f4ab51
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demo data de
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2022-11-08 18:07:44 +00:00 |
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Neil Horner
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d8834b7573
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Verison bump
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2022-08-24 11:38:20 +01:00 |
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Sarah Griffiths
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c6b6121491
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CW-649
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2022-08-23 19:15:46 +00:00 |
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Neil Horner
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d477a747e6
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Switch isoform table thresholding to just displaying to n rows based on coverage
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2022-08-08 13:48:15 +00:00 |
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Neil Horner
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956c80573a
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Fusions
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2022-08-01 12:01:01 +00:00 |
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Thomas Rich
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7a61c04ed9
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Update nextflow_schema.json
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2022-07-27 14:35:40 +00:00 |
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Neil Horner
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f01b879be9
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nf-core lint fixes
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2022-07-26 09:54:32 +00:00 |
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Chris Wright
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1ab5e2744c
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Skip fastq>a conversion
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2022-07-14 09:08:44 +00:00 |
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Sarah Griffiths
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fa1818a81d
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template updates
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2022-07-07 19:14:52 +00:00 |
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Neil Horner
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d97e84cdc1
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Epi2melabs pychopper
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2022-06-01 12:08:00 +00:00 |
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Neil Horner
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3b69e64c4f
|
Github issues
|
2022-04-11 15:08:47 +00:00 |
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Neil Horner
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e2f290b415
|
New docs format
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2022-04-08 16:33:50 +00:00 |
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Neil Horner
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c2a0f8dc21
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Re-add ability to do direct RNA
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2022-04-05 18:04:16 +00:00 |
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Neil Horner
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7e33eb2c3b
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Moved fiterable table into aplanat and general tidy up
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2022-02-28 14:17:46 +00:00 |
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Neil Horner
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76fd8f9c81
|
Seperated out the params into logical sections
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2022-02-23 14:58:39 +00:00 |
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Neil Horner
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3030ccbbdf
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Updated version in schema
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2022-02-07 11:56:42 +00:00 |
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Neil Horner
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5dfbb0f38a
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Merge de novo pipeline
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2022-01-26 15:54:55 +00:00 |
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Thomas Rich
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151ef46522
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Update nextflow_schema.json
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2022-01-11 16:04:22 +00:00 |
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Neil Horner
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458ac5d274
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Initial port of ref-isoforms to Nextflow
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2021-12-08 14:34:07 +00:00 |
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Chris Wright
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e486b98a2c
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add schema
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2021-09-28 15:11:18 +01:00 |
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