Neil Horner
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7ca3110648
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Bump V1.6.0
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2024-12-13 13:11:56 +00:00 |
|
Neil Horner
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cb00ede5d8
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Merge branch 'CW-5398' into 'dev'
Access to undefined channel output bug CW-5398
Closes CW-5398
See merge request epi2melabs/workflows/wf-transcriptomes!192
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2024-12-13 11:51:07 +00:00 |
|
Neil Horner
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c8c5922965
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Access to undefined channel output bug CW-5398
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2024-12-13 11:51:04 +00:00 |
|
Neil Horner
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4c46f88f00
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Merge branch 'gene_assignment_CW-5416' into 'dev'
Account for stringtie multigene transcript artefacts
Closes CW-5369
See merge request epi2melabs/workflows/wf-transcriptomes!189
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2024-12-12 14:30:32 +00:00 |
|
Neil Horner
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0a5c39cdf4
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Account for stringtie multigene transcript artefacts
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2024-12-12 14:30:31 +00:00 |
|
Neil Horner
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112e87ad94
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Merge branch 'template_2024_12_02' into 'dev'
template update
See merge request epi2melabs/workflows/wf-transcriptomes!191
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2024-12-05 10:26:26 +00:00 |
|
Neil Horner
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d38c7f3661
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template update
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2024-12-05 10:26:25 +00:00 |
|
Neil Horner
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474c0fae3b
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Merge branch 'template_update_dec24' into 'dev'
Update permissions
See merge request epi2melabs/workflows/wf-transcriptomes!190
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2024-12-02 12:55:51 +00:00 |
|
Neil Horner
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624c16a3b1
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Update permissions
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2024-12-02 12:55:51 +00:00 |
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Sarah Griffiths
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b3fbb1117c
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Merge branch 'CW-3930' into 'dev'
Actually output the dexseq file
Closes CW-3930
See merge request epi2melabs/workflows/wf-transcriptomes!188
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2024-11-05 11:51:40 +00:00 |
|
Sarah Griffiths
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465d060933
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Actually output the dexseq file
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2024-11-05 11:51:40 +00:00 |
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Neil Horner
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45a717aaf3
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Merge branch 'bokehreport_CW-3077' into 'dev'
Update report CW-3077
See merge request epi2melabs/workflows/wf-transcriptomes!168
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2024-10-25 15:18:05 +00:00 |
|
Neil Horner
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5c4780a1b2
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Update report CW-3077
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2024-10-25 15:18:05 +00:00 |
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Sarah Griffiths
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d2ddad27a2
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Merge branch 'CW-4886' into 'dev'
Tidy de analysis
Closes CW-4886
See merge request epi2melabs/workflows/wf-transcriptomes!185
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2024-09-16 09:26:13 +00:00 |
|
Sarah Griffiths
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d83807f38d
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Tidy de analysis
|
2024-09-16 09:26:12 +00:00 |
|
Sam Nicholls
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beb094ea85
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Merge branch 'CW-4613-b' into 'dev'
IGV absolute paths fix
Closes CW-4613
See merge request epi2melabs/workflows/wf-transcriptomes!184
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2024-09-13 11:48:16 +00:00 |
|
Sarah Griffiths
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be1d322287
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IGV absolute paths fix
|
2024-09-13 11:48:16 +00:00 |
|
Sarah Griffiths
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ce4bfa9a30
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Merge branch 'template-updates' into 'dev'
Template updates
See merge request epi2melabs/workflows/wf-transcriptomes!183
|
2024-09-11 12:47:01 +00:00 |
|
Sarah Griffiths
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7ced52c05b
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Template updates
|
2024-09-11 12:47:01 +00:00 |
|
Sam Nicholls
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31085d0fe4
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Merge branch 'cw-4886' into 'dev'
Output dtu_plots to local work dir then mv [CW-4886]
See merge request epi2melabs/workflows/wf-transcriptomes!182
|
2024-09-09 18:41:18 +00:00 |
|
Sam Nicholls
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46363987aa
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Output dtu_plots to local work dir then mv [CW-4886]
|
2024-09-09 18:41:17 +00:00 |
|
Sarah Griffiths
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f8e08baed1
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Merge branch 'CW-4613' into 'dev'
CW-4613 IGV config
Closes CW-4613
See merge request epi2melabs/workflows/wf-transcriptomes!181
|
2024-09-06 09:27:56 +00:00 |
|
Sarah Griffiths
|
14fe76dabc
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CW-4613 IGV config
|
2024-09-06 09:27:56 +00:00 |
|
Neil Horner
|
7287fdcdb1
|
Merge branch 'v1.3.0_fix' into 'dev'
Missed v from version
See merge request epi2melabs/workflows/wf-transcriptomes!180
|
2024-08-08 13:43:26 +00:00 |
|
Neil Horner
|
f62ec6c127
|
Missed v from version
|
2024-08-08 13:08:59 +01:00 |
|
Neil Horner
|
d7bb5c80f7
|
Merge branch 'pychopper_primer_CW_4184' into 'dev'
Add new cDNA kits
See merge request epi2melabs/workflows/wf-transcriptomes!177
|
2024-08-07 11:31:15 +00:00 |
|
Neil Horner
|
abc40d9015
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Add new cDNA kits
|
2024-08-07 11:31:14 +00:00 |
|
Sam Nicholls
|
40456d676b
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Merge branch 'remove_jaffal_CW-4552' into 'dev'
Remove fusion detection [CW-4552]
Closes CW-4552
See merge request epi2melabs/workflows/wf-transcriptomes!179
|
2024-08-06 20:20:20 +00:00 |
|
Neil Horner
|
0200514536
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Remove fusion detection [CW-4552]
|
2024-08-06 20:20:19 +00:00 |
|
Sam Nicholls
|
a037538744
|
Merge branch 'template_2024-07-10' into 'dev'
template update 2024-07-10
See merge request epi2melabs/workflows/wf-transcriptomes!178
|
2024-07-26 08:34:05 +00:00 |
|
Neil Horner
|
0f4eee002a
|
template update 2024-07-10
|
2024-07-26 08:34:05 +00:00 |
|
Neil Horner
|
f01006c302
|
Merge branch 'v1.2.1' into 'dev'
Bump v1.2.1
See merge request epi2melabs/workflows/wf-transcriptomes!176
|
2024-07-04 14:48:31 +00:00 |
|
Neil Horner
|
a5699b2945
|
Bump v1.2.1
|
2024-07-04 14:48:30 +00:00 |
|
Neil Horner
|
3d5c4c38eb
|
Merge branch 'template_update_0624' into 'dev'
Template update
See merge request epi2melabs/workflows/wf-transcriptomes!175
|
2024-07-04 13:25:20 +00:00 |
|
Neil Horner
|
c662293317
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Template update
|
2024-06-27 16:13:55 +01:00 |
|
Neil Horner
|
1fed562746
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Merge branch 'pychop_threads_CW-4010' into 'dev'
Give pychopper more threads
See merge request epi2melabs/workflows/wf-transcriptomes!174
|
2024-06-25 14:11:28 +00:00 |
|
Neil Horner
|
411290d5a4
|
Give pychopper more threads
|
2024-06-25 14:11:28 +00:00 |
|
Sarah Griffiths
|
d5df11cce4
|
Merge branch 'CW-3998' into 'dev'
Handle annotations with no strand CW-3998
Closes CW-3998
See merge request epi2melabs/workflows/wf-transcriptomes!170
|
2024-06-25 13:08:32 +00:00 |
|
Sarah Griffiths
|
57c0f5b303
|
Handle annotations with no strand CW-3998
|
2024-06-25 13:08:32 +00:00 |
|
Sam Nicholls
|
9353e23cc9
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Merge branch 'bump_v1.2.0' into 'dev'
Bump v1.2.0
See merge request epi2melabs/workflows/wf-transcriptomes!173
|
2024-06-04 17:28:29 +00:00 |
|
Neil Horner
|
515c8c0ed8
|
Bump v1.2.0
|
2024-06-04 17:28:29 +00:00 |
|
Neil Horner
|
f89a61d304
|
Merge branch 'bams_CW-3512' into 'dev'
BAM input CW-3512
See merge request epi2melabs/workflows/wf-transcriptomes!172
|
2024-06-04 09:25:35 +00:00 |
|
Neil Horner
|
cfa41f16d0
|
BAM input CW-3512
|
2024-06-04 09:25:31 +00:00 |
|
Natalia Garcia
|
7ca0d269f4
|
Merge branch 'template_2024-05-24' into 'dev'
Template update 2024 05 24
See merge request epi2melabs/workflows/wf-transcriptomes!171
|
2024-05-30 19:40:11 +00:00 |
|
Neil Horner
|
e2585dcd11
|
Template update 2024 05 24
|
2024-05-30 19:40:11 +00:00 |
|
Sam Nicholls
|
39cc58ae9e
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Merge branch 'temp-update' into 'dev'
Temp update
See merge request epi2melabs/workflows/wf-transcriptomes!167
|
2024-05-10 08:42:13 +00:00 |
|
Sarah Griffiths
|
d7fcb2d5f7
|
Temp update
|
2024-05-10 08:42:12 +00:00 |
|
Sarah Griffiths
|
6f2ac3241b
|
Merge branch 'CW-3244' into 'dev'
change significance level to mark on MA plot
Closes CW-3244
See merge request epi2melabs/workflows/wf-transcriptomes!164
|
2024-04-10 08:09:23 +00:00 |
|
Sarah Griffiths
|
63e0fe6524
|
change significance level to mark on MA plot
|
2024-04-10 08:09:23 +00:00 |
|
Sarah Griffiths
|
f85e039f98
|
Merge branch 'template-update' into 'dev'
Template update
See merge request epi2melabs/workflows/wf-transcriptomes!166
|
2024-04-03 09:47:30 +00:00 |
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