Sarah Griffiths
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d5de051fd4
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Only use exons in DE analysis [CW-5786]
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2025-03-28 09:58:05 +00:00 |
|
Sarah Griffiths
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9900143122
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Merge branch 'CW-2965' into 'dev'
Error message if ref_genome and ref_annotation mismatch CW-2965
Closes CW-2965
See merge request epi2melabs/workflows/wf-transcriptomes!202
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2025-03-14 19:06:47 +00:00 |
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Sarah Griffiths
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f9bd2ab574
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Error message if ref_genome and ref_annotation mismatch CW-2965
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2025-03-14 19:06:47 +00:00 |
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Neil Horner
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9ecd1345e9
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Merge branch 'temp-update' into 'dev'
Template v5.5.0 updates
See merge request epi2melabs/workflows/wf-transcriptomes!205
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2025-03-14 11:04:19 +00:00 |
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Sarah Griffiths
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b4bba1432b
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Template v5.5.0 updates
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2025-03-14 11:04:18 +00:00 |
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Chris Wright
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9701041ce5
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Merge branch 'fixup-docs' into 'dev'
remove spaces in {{ ref_genome file }} in docs
See merge request epi2melabs/workflows/wf-transcriptomes!203
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2025-03-04 18:20:49 +00:00 |
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Chris Wright
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d2c1db81e8
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remove spaces in {{ ref_genome file }} in docs
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2025-03-04 16:24:06 +00:00 |
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Neil Horner
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350cb8d23b
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Merge branch 'missing_file_CW-5556' into 'dev'
Fix overwritten DGE results file
See merge request epi2melabs/workflows/wf-transcriptomes!199
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2025-02-18 17:05:45 +00:00 |
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Neil Horner
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b62722751f
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Fix overwritten DGE results file
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2025-02-18 17:05:45 +00:00 |
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Natalia Garcia
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205ff5ca59
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Merge branch 'cw-5563-wf-transcriptomes' into 'dev'
Update workflow tags [CW-5563]
See merge request epi2melabs/workflows/wf-transcriptomes!201
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2025-02-13 23:39:09 +00:00 |
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Natalia Garcia
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122ad8403a
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Update workflow tags [CW-5563]
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2025-02-13 23:39:09 +00:00 |
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Kiah McIntosh
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428e337e22
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Merge branch 'cw-3398' into 'dev'
Use args for R script inputs [CW-3398]
See merge request epi2melabs/workflows/wf-transcriptomes!200
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2025-02-07 08:42:49 +00:00 |
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Kiah McIntosh
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eab8ef1efe
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Use args for R script inputs [CW-3398]
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2025-02-07 08:42:49 +00:00 |
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Neil Horner
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91a514abd2
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Merge branch 'schema_updates_CW-5529' into 'dev'
Update schema
See merge request epi2melabs/workflows/wf-transcriptomes!197
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2025-01-23 10:59:32 +00:00 |
|
Neil Horner
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e534921877
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Update schema
|
2025-01-23 10:59:31 +00:00 |
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Matt Parker
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632a8f85a2
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Merge branch 'split_bam_mem_CW-5352' into 'dev'
Update memory for split_bam and build_minimap_index_transcriptome
Closes CW-5352
See merge request epi2melabs/workflows/wf-transcriptomes!195
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2025-01-03 17:06:38 +00:00 |
|
Neil Horner
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937a41f2cc
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Update memory for split_bam and build_minimap_index_transcriptome
|
2025-01-03 17:06:38 +00:00 |
|
Matt Parker
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a33f3b967c
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Merge branch 'bump_v1.6.1' into 'dev'
bump version
See merge request epi2melabs/workflows/wf-transcriptomes!196
|
2025-01-03 12:44:09 +00:00 |
|
Neil Horner
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39ef6ab16a
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bump version
|
2025-01-03 12:44:08 +00:00 |
|
Neil Horner
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724a6515ea
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Merge branch 'empty_gff_CW-5438' into 'dev'
Empty GFF bug CW-5438
See merge request epi2melabs/workflows/wf-transcriptomes!194
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2024-12-18 15:01:34 +00:00 |
|
Neil Horner
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0ec44d03bd
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Empty GFF bug CW-5438
|
2024-12-18 15:01:33 +00:00 |
|
Matt Parker
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74c19f1ea5
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Merge branch 'bump_v1.6.0' into 'dev'
Bump V1.6.0
See merge request epi2melabs/workflows/wf-transcriptomes!193
|
2024-12-13 13:11:56 +00:00 |
|
Neil Horner
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7ca3110648
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Bump V1.6.0
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2024-12-13 13:11:56 +00:00 |
|
Neil Horner
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cb00ede5d8
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Merge branch 'CW-5398' into 'dev'
Access to undefined channel output bug CW-5398
Closes CW-5398
See merge request epi2melabs/workflows/wf-transcriptomes!192
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2024-12-13 11:51:07 +00:00 |
|
Neil Horner
|
c8c5922965
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Access to undefined channel output bug CW-5398
|
2024-12-13 11:51:04 +00:00 |
|
Neil Horner
|
4c46f88f00
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Merge branch 'gene_assignment_CW-5416' into 'dev'
Account for stringtie multigene transcript artefacts
Closes CW-5369
See merge request epi2melabs/workflows/wf-transcriptomes!189
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2024-12-12 14:30:32 +00:00 |
|
Neil Horner
|
0a5c39cdf4
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Account for stringtie multigene transcript artefacts
|
2024-12-12 14:30:31 +00:00 |
|
Neil Horner
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112e87ad94
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Merge branch 'template_2024_12_02' into 'dev'
template update
See merge request epi2melabs/workflows/wf-transcriptomes!191
|
2024-12-05 10:26:26 +00:00 |
|
Neil Horner
|
d38c7f3661
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template update
|
2024-12-05 10:26:25 +00:00 |
|
Neil Horner
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474c0fae3b
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Merge branch 'template_update_dec24' into 'dev'
Update permissions
See merge request epi2melabs/workflows/wf-transcriptomes!190
|
2024-12-02 12:55:51 +00:00 |
|
Neil Horner
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624c16a3b1
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Update permissions
|
2024-12-02 12:55:51 +00:00 |
|
Sarah Griffiths
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b3fbb1117c
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Merge branch 'CW-3930' into 'dev'
Actually output the dexseq file
Closes CW-3930
See merge request epi2melabs/workflows/wf-transcriptomes!188
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2024-11-05 11:51:40 +00:00 |
|
Sarah Griffiths
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465d060933
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Actually output the dexseq file
|
2024-11-05 11:51:40 +00:00 |
|
Neil Horner
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45a717aaf3
|
Merge branch 'bokehreport_CW-3077' into 'dev'
Update report CW-3077
See merge request epi2melabs/workflows/wf-transcriptomes!168
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2024-10-25 15:18:05 +00:00 |
|
Neil Horner
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5c4780a1b2
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Update report CW-3077
|
2024-10-25 15:18:05 +00:00 |
|
Sarah Griffiths
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d2ddad27a2
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Merge branch 'CW-4886' into 'dev'
Tidy de analysis
Closes CW-4886
See merge request epi2melabs/workflows/wf-transcriptomes!185
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2024-09-16 09:26:13 +00:00 |
|
Sarah Griffiths
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d83807f38d
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Tidy de analysis
|
2024-09-16 09:26:12 +00:00 |
|
Sam Nicholls
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beb094ea85
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Merge branch 'CW-4613-b' into 'dev'
IGV absolute paths fix
Closes CW-4613
See merge request epi2melabs/workflows/wf-transcriptomes!184
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2024-09-13 11:48:16 +00:00 |
|
Sarah Griffiths
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be1d322287
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IGV absolute paths fix
|
2024-09-13 11:48:16 +00:00 |
|
Sarah Griffiths
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ce4bfa9a30
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Merge branch 'template-updates' into 'dev'
Template updates
See merge request epi2melabs/workflows/wf-transcriptomes!183
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2024-09-11 12:47:01 +00:00 |
|
Sarah Griffiths
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7ced52c05b
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Template updates
|
2024-09-11 12:47:01 +00:00 |
|
Sam Nicholls
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31085d0fe4
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Merge branch 'cw-4886' into 'dev'
Output dtu_plots to local work dir then mv [CW-4886]
See merge request epi2melabs/workflows/wf-transcriptomes!182
|
2024-09-09 18:41:18 +00:00 |
|
Sam Nicholls
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46363987aa
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Output dtu_plots to local work dir then mv [CW-4886]
|
2024-09-09 18:41:17 +00:00 |
|
Sarah Griffiths
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f8e08baed1
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Merge branch 'CW-4613' into 'dev'
CW-4613 IGV config
Closes CW-4613
See merge request epi2melabs/workflows/wf-transcriptomes!181
|
2024-09-06 09:27:56 +00:00 |
|
Sarah Griffiths
|
14fe76dabc
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CW-4613 IGV config
|
2024-09-06 09:27:56 +00:00 |
|
Neil Horner
|
7287fdcdb1
|
Merge branch 'v1.3.0_fix' into 'dev'
Missed v from version
See merge request epi2melabs/workflows/wf-transcriptomes!180
|
2024-08-08 13:43:26 +00:00 |
|
Neil Horner
|
f62ec6c127
|
Missed v from version
|
2024-08-08 13:08:59 +01:00 |
|
Neil Horner
|
d7bb5c80f7
|
Merge branch 'pychopper_primer_CW_4184' into 'dev'
Add new cDNA kits
See merge request epi2melabs/workflows/wf-transcriptomes!177
|
2024-08-07 11:31:15 +00:00 |
|
Neil Horner
|
abc40d9015
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Add new cDNA kits
|
2024-08-07 11:31:14 +00:00 |
|
Sam Nicholls
|
40456d676b
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Merge branch 'remove_jaffal_CW-4552' into 'dev'
Remove fusion detection [CW-4552]
Closes CW-4552
See merge request epi2melabs/workflows/wf-transcriptomes!179
|
2024-08-06 20:20:20 +00:00 |
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