Sam Nicholls
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efbe4d007c
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Shorten workflow names for log
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2026-05-26 20:12:38 +00:00 |
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Natalia Garcia
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e95b51016a
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Merge branch 'tidy-up-schema-validation' into 'dev'
Tidy up schema validation [CW-7278]
See merge request epi2melabs/workflows/wf-transcriptomes!303
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2026-05-26 18:42:12 +00:00 |
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Natalia Garcia
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6ca2f2f027
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Tidy up schema validation [CW-7278]
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2026-05-26 18:42:11 +00:00 |
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Neil Horner
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abf467e528
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Merge branch '20_volcano_points_cw-7277' into 'dev'
Use all point for volcano and tables [CW-7277]
See merge request epi2melabs/workflows/wf-transcriptomes!300
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2026-05-26 17:12:20 +00:00 |
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Neil Horner
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01e8652317
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Use all point for volcano and tables [CW-7277]
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2026-05-26 17:12:20 +00:00 |
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Neil Horner
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da5f78497e
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Merge branch 'hier_low_data_cw-7275' into 'dev'
Clustering plots low data [CW-7275]
See merge request epi2melabs/workflows/wf-transcriptomes!298
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2026-05-26 17:10:46 +00:00 |
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Neil Horner
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fa884c71c1
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Clustering plots low data [CW-7275]
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2026-05-26 17:10:46 +00:00 |
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Rory Munro
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a4b08414cb
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Merge branch 'remove-bigwig' into 'dev'
Remove bigwig CI test
See merge request epi2melabs/workflows/wf-transcriptomes!302
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2026-05-26 16:43:06 +00:00 |
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Rory Munro
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1192f09bc7
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Remove bigwig CI test
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2026-05-26 16:43:05 +00:00 |
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Sarah Griffiths
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c36404422e
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Merge branch 'CW-7274' into 'dev'
Add force alignment option [CW-7274]
Closes CW-7274
See merge request epi2melabs/workflows/wf-transcriptomes!299
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2026-05-26 14:44:50 +00:00 |
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Sarah Griffiths
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3ca4511b5b
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Add force alignment option [CW-7274]
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2026-05-26 14:44:50 +00:00 |
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Rory Munro
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6e72a4538c
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Merge branch 'rmunro-dev-patch-42566' into 'dev'
Bump modkit sha version [CW-7273]
See merge request epi2melabs/workflows/wf-transcriptomes!297
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2026-05-26 12:31:05 +00:00 |
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Rory Munro
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86d100c869
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Bump modkit sha version [CW-7273]
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2026-05-26 12:31:05 +00:00 |
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Kiah McIntosh
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3d49d01ff2
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Merge branch 'tube-map-update' into 'dev'
Tube map update
See merge request epi2melabs/workflows/wf-transcriptomes!296
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2026-05-26 12:27:16 +00:00 |
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Kiah McIntosh
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dff1353790
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Tube map update
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2026-05-26 12:27:15 +00:00 |
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Sam Nicholls
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6327eda710
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Merge branch 'cw-7196' into 'dev'
Per-sample pileup counts [CW-7196]
See merge request epi2melabs/workflows/wf-transcriptomes!246
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2026-05-26 09:52:39 +00:00 |
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Sam Nicholls
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175e6c9437
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Per-sample pileup counts [CW-7196]
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2026-05-26 09:52:38 +00:00 |
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Sam Nicholls
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c2656983d8
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Merge branch 'exclude-data-artifacts' into 'dev'
CI : Exclude downloaded data artifacts
See merge request epi2melabs/workflows/wf-transcriptomes!293
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2026-05-26 08:04:59 +00:00 |
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Sam Nicholls
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6c0a59581f
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CI : Exclude downloaded data artifacts
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2026-05-26 08:04:59 +00:00 |
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Natalia Garcia
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c87a5ce09c
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Merge branch 'CW-7212' into 'dev'
Exclude non existent samples or samples without reads after ingress
Closes CW-7212
See merge request epi2melabs/workflows/wf-transcriptomes!255
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2026-05-26 07:53:34 +00:00 |
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Natalia Garcia
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04ddfbf872
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Exclude non existent samples or samples without reads after ingress
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2026-05-26 07:53:34 +00:00 |
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Sarah Griffiths
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d416441e11
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Merge branch 'CW-7271_missing_summary' into 'dev'
Add the missing annotation ref summary [CW-7271]
Closes CW-7271
See merge request epi2melabs/workflows/wf-transcriptomes!290
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2026-05-22 17:05:56 +00:00 |
|
Neil Horner
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020d555219
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Add the missing annotation ref summary [CW-7271]
|
2026-05-22 17:05:56 +00:00 |
|
Kiah McIntosh
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a5c25ec0a1
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Merge branch 'tube-map-modkit' into 'dev'
Add modkit to tube map
See merge request epi2melabs/workflows/wf-transcriptomes!292
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2026-05-22 16:33:01 +00:00 |
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Kiah McIntosh
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df2d333797
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Add modkit to tube map
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2026-05-22 16:33:01 +00:00 |
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Kiah McIntosh
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50b971604e
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Merge branch 'cw-7238' into 'dev'
SQANTI3 results in report [CW-7238]
See merge request epi2melabs/workflows/wf-transcriptomes!271
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2026-05-22 15:28:21 +00:00 |
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Kiah McIntosh
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1f456da61d
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SQANTI3 results in report [CW-7238]
|
2026-05-22 15:28:21 +00:00 |
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Neil Horner
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845c03f7f5
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Merge branch 'hier_plots' into 'dev'
[CW-7211] Hierarchical plot + PCA
See merge request epi2melabs/workflows/wf-transcriptomes!251
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2026-05-22 14:34:50 +00:00 |
|
Neil Horner
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5823f04809
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[CW-7211] Hierarchical plot + PCA
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2026-05-22 14:34:50 +00:00 |
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Natalia Garcia
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3204d24045
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Merge branch 'template-updates' into 'dev'
Use new sample sheet validation
See merge request epi2melabs/workflows/wf-transcriptomes!289
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2026-05-22 12:58:17 +00:00 |
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Natalia Garcia
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2cfc7b2549
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Use new sample sheet validation
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2026-05-22 12:58:17 +00:00 |
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Neil Horner
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1b3155d591
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Merge branch 'report_glow_up_2' into 'dev'
Report glow up 2 [CW-7207]
See merge request epi2melabs/workflows/wf-transcriptomes!279
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2026-05-22 11:55:44 +00:00 |
|
Neil Horner
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f45056c438
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Report glow up 2 [CW-7207]
|
2026-05-22 11:55:44 +00:00 |
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Kiah McIntosh
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8c6196ddc1
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Merge branch 'cw-7270-readme' into 'dev'
Update readme for alignment and ingress outputs [CW-7270]
See merge request epi2melabs/workflows/wf-transcriptomes!288
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2026-05-22 10:44:40 +00:00 |
|
Kiah McIntosh
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90cc4cf73b
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Update readme for alignment and ingress outputs [CW-7270]
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2026-05-22 10:44:40 +00:00 |
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Sam Nicholls
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89626ab016
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Merge branch 'gene_names' into 'dev'
Add gene name to TSV outputs [CW-7160]
See merge request epi2melabs/workflows/wf-transcriptomes!274
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2026-05-22 10:23:21 +00:00 |
|
Neil Horner
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d9c9cc6765
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Add gene name to TSV outputs [CW-7160]
|
2026-05-22 10:23:21 +00:00 |
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Rory Munro
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a86d325393
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Merge branch 'override-singularity' into 'dev'
Override singularity CI
See merge request epi2melabs/workflows/wf-transcriptomes!287
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2026-05-22 10:15:55 +00:00 |
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Rory Munro
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bfebfaa4b3
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Override singularity CI
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2026-05-22 10:15:55 +00:00 |
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Sarah Griffiths
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dac0a6ef01
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Merge branch 'CW-7261-b' into 'dev'
Annotation quant issues test [CW-7261]
Closes CW-7261
See merge request epi2melabs/workflows/wf-transcriptomes!284
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2026-05-22 09:38:34 +00:00 |
|
Sarah Griffiths
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7b94eb2ca0
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Annotation quant issues test [CW-7261]
|
2026-05-22 09:38:33 +00:00 |
|
Kiah McIntosh
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176762fbe7
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Merge branch 'alignment-outputs' into 'dev'
Alignment outputs in per sample folder [CW-7270]
See merge request epi2melabs/workflows/wf-transcriptomes!280
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2026-05-22 09:12:26 +00:00 |
|
Kiah McIntosh
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f5e5f3a790
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Alignment outputs in per sample folder [CW-7270]
|
2026-05-22 09:12:26 +00:00 |
|
Kiah McIntosh
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18e0c5e92f
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Merge branch 'cw-7208' into 'dev'
Skip cohort processes when n=1 [CW-7208]
See merge request epi2melabs/workflows/wf-transcriptomes!267
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2026-05-21 16:19:18 +00:00 |
|
Kiah McIntosh
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759cb9d868
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Skip cohort processes when n=1 [CW-7208]
|
2026-05-21 16:19:18 +00:00 |
|
Sarah Griffiths
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d520a7635b
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Merge branch 'CW-7265' into 'dev'
Bambu always 1 thread [CW-7265]
Closes CW-7265
See merge request epi2melabs/workflows/wf-transcriptomes!285
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2026-05-21 13:56:33 +00:00 |
|
Sarah Griffiths
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4075523da0
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Bambu always 1 thread [CW-7265]
|
2026-05-21 13:56:33 +00:00 |
|
Neil Horner
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1dd6e3fd06
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Merge branch 'no_phone_home_cw-7260' into 'dev'
No biocManager test phone home [CW-7260]
See merge request epi2melabs/workflows/wf-transcriptomes!277
|
2026-05-21 13:45:11 +00:00 |
|
Neil Horner
|
bc1ced9c9f
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No biocManager test phone home [CW-7260]
|
2026-05-21 13:45:11 +00:00 |
|
Kiah McIntosh
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e98a3f14be
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Merge branch 'cw-7264' into 'dev'
Sort joint bambu inputs to fix caching [CW-7264]
See merge request epi2melabs/workflows/wf-transcriptomes!282
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2026-05-20 16:31:25 +00:00 |
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