48 lines
1.3 KiB
Markdown
48 lines
1.3 KiB
Markdown
# Changelog
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All notable changes to this project will be documented in this file.
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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
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and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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## [unreleased]
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### Changed
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## [v0.1.4]
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### Added
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- JAFFAL fusion detectoion subworkflow
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### Changed
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- Args parser for fastqingress
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- Set out_dir option type to ensure output is written to correct directory on Windows
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- Skip unnecessary conversion to fasta from fastq
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- Fastqingress metadata map
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- Changed workflow name to wf-transcriptomes
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## [v0.1.3]
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### Changed
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- Better help text on cli
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- Use EPI2ME Labs-maintained version of pychopper
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## [v0.1.2]
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### Added
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- direct_rna option
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- Some extra error handling
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- Minor report display improvements
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## [v0.1.1]
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### Fixed
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- Incorrect numbers and of transcripts caused by merging gff files with same gene and transcript ids
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- Error handling in de novo pipeline. Skip clusters in build_backbones that cause an isONclust2 error
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- Several small fixes in report plotting
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## [v0.1.0]
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### Added
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- Added the denovo pipeline
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### Changed
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- Updates to the report plots
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## [v0.0.1]
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### Added
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- First release
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- Initial port of Snakemake WF from https://github.com/nanoporetech/pipeline-nanopore-ref-isoforms
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