1.5 KiB
1.5 KiB
Changelog
All notable changes to this project will be documented in this file.
The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.
[unreleased]
Updated
- Removed sanitize option
Added
- Demo differential expression data in repository.
- Improved DE explanation in docs
Fixed
- Error if condition sheet and sample sheet don't match.
[v0.1.5]
Added
- Differential transcript and gene expression subworkflow
[v0.1.4]
Added
- JAFFAL fusion detection subworkflow
Changed
- Args parser for fastqingress
- Set out_dir option type to ensure output is written to correct directory on Windows
- Skip unnecessary conversion to fasta from fastq
- Fastqingress metadata map
- Changed workflow name to wf-transcriptomes
[v0.1.3]
Changed
- Better help text on cli
- Use EPI2ME Labs-maintained version of pychopper
[v0.1.2]
Added
- direct_rna option
- Some extra error handling
- Minor report display improvements
[v0.1.1]
Fixed
- Incorrect numbers and of transcripts caused by merging gff files with same gene and transcript ids
- Error handling in de novo pipeline. Skip clusters in build_backbones that cause an isONclust2 error
- Several small fixes in report plotting
[v0.1.0]
Added
- Added the denovo pipeline
Changed
- Updates to the report plots
[v0.0.1]
Added
- First release
- Initial port of Snakemake WF from https://github.com/nanoporetech/pipeline-nanopore-ref-isoforms