5 lines
687 B
Markdown
5 lines
687 B
Markdown
*Does the workflow support de novo assembly?* - Currently the workflow does not have a *de novo* mode.
|
|
|
|
*Why is the IGV panel not showing?* - The workflow expects either an uncompressed or [`bgzip`](https://www.htslib.org/doc/bgzip.html)-compressed reference. If the user provides a reference compressed not with `bgzip`, the workflow will run to completion, but won't be able to generate the necessary indexes to visualize the outputs in IGV.
|
|
|
|
If your question is not answered here, please report any issues or suggestions on the [github issues](https://github.com/epi2me-labs/wf-transcriptomes/issues) page or start a discussion on the [community](https://community.nanoporetech.com/). |