44 lines
1.2 KiB
Markdown
44 lines
1.2 KiB
Markdown
# Changelog
|
|
All notable changes to this project will be documented in this file.
|
|
|
|
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
|
|
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
|
|
|
|
## [unreleased]
|
|
### Changed
|
|
- Skip unnecessary conversion to fasta from fastq
|
|
- Fastqingress metadata map
|
|
|
|
## [v0.1.4]
|
|
### Changed
|
|
- Args parser for fastqingress
|
|
- Set out_dir option type to ensure output is written to correct directory on Windows
|
|
|
|
## [v0.1.3]
|
|
### Changed
|
|
- Better help text on cli
|
|
- Use EPI2ME Labs-maintained version of pychopper
|
|
|
|
## [v0.1.2]
|
|
### Added
|
|
- direct_rna option
|
|
- Some extra error handling
|
|
- Minor report display improvements
|
|
|
|
## [v0.1.1]
|
|
### Fixed
|
|
- Incorrect numbers and of transcripts caused by merging gff files with same gene and transcript ids
|
|
- Error handling in de novo pipeline. Skip clusters in build_backbones that cause an isONclust2 error
|
|
- Several small fixes in report plotting
|
|
|
|
## [v0.1.0]
|
|
### Added
|
|
- Added the denovo pipeline
|
|
### Changed
|
|
- Updates to the report plots
|
|
|
|
## [v0.0.1]
|
|
### Added
|
|
- First release
|
|
- Initial port of Snakemake WF from https://github.com/nanoporetech/pipeline-nanopore-ref-isoforms
|