wf-transcriptomes-v202/docs/02_introduction.md

This workflow can be used for the following:

• Identify RNA transcripts using either cDNA or direct RNA reads.
• Reference aided transcriptome assembly.
• Annotation of assembled transcripts.
• Differential gene expression analysis using a pre-computed or assembled reference transcriptome.
• Differential transcript usage analysis using a precomputed or assembled reference transcriptome.