Natalia Garcia
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0eb808b605
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Merge branch 'CW-7191' into 'dev'
Add missing directives [CW-7191]
Closes CW-7191
See merge request epi2melabs/workflows/wf-transcriptomes!240
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2026-05-08 14:56:31 +00:00 |
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Natalia Garcia
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d7337638f8
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Add missing directives [CW-7191]
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2026-05-08 14:56:31 +00:00 |
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Sam Nicholls
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909065a298
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Merge branch 'no_bioc_online_check_cw7194' into 'dev'
No bioc version check [CW-7194]
See merge request epi2melabs/workflows/wf-transcriptomes!243
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2026-05-08 14:08:37 +00:00 |
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Neil Horner
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543b39bd79
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No bioc version check [CW-7194]
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2026-05-08 14:08:37 +00:00 |
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Chris Wright
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247f1aaf0b
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Merge branch 'r-tests' into 'dev'
[CW-7161] R tests
See merge request epi2melabs/workflows/wf-transcriptomes!235
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2026-05-08 07:55:06 +00:00 |
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Chris Wright
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508a6b0525
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[CW-7161] R tests
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2026-05-08 07:55:06 +00:00 |
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Kiah McIntosh
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9ddec6ff61
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Merge branch 'ref-prep' into 'dev'
[CW-7166] [CW-7169] Reference and annotation preparation
See merge request epi2melabs/workflows/wf-transcriptomes!239
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2026-05-07 10:09:36 +00:00 |
|
Chris Wright
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3e0dfd21e2
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[CW-7166] [CW-7169] Reference and annotation preparation
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2026-05-07 10:09:36 +00:00 |
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Chris Wright
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265b462cc6
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Merge branch 'de-validation-ndr-fixes' into 'dev'
Fix DE validation gating and per-sample NDR
See merge request epi2melabs/workflows/wf-transcriptomes!238
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2026-05-06 08:16:28 +00:00 |
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Chris Wright
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63d9d14f17
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Fix DE validation gating and per-sample NDR
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2026-05-05 18:42:18 +01:00 |
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Chris Wright
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0633a6304d
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Merge branch 'r-test-infra-only' into 'dev'
[CW-7161] Add workflow-local R test infrastructure
See merge request epi2melabs/workflows/wf-transcriptomes!236
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2026-05-05 17:10:10 +00:00 |
|
Chris Wright
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f180b9e331
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[CW-7161] Add workflow-local R test infrastructure
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2026-05-05 17:10:10 +00:00 |
|
Chris Wright
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c17d98d6f9
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Merge branch 'main-null-read-filter' into 'dev'
Exclude ingress samples with no reads
See merge request epi2melabs/workflows/wf-transcriptomes!237
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2026-05-05 16:40:24 +00:00 |
|
Chris Wright
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9dd5895482
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Exclude ingress samples with no reads
|
2026-05-05 16:40:24 +00:00 |
|
Chris Wright
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dcc8c04f54
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Merge branch 'refresh' into 'dev'
Refresh
See merge request epi2melabs/workflows/wf-transcriptomes!232
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2026-05-05 14:10:04 +00:00 |
|
Chris Wright
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43cf5bf42a
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Refresh workflow to use bambu, sqanti, and dexseq
|
2026-05-05 14:10:04 +00:00 |
|
Kiah McIntosh
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ea18f68c50
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Merge branch 'update-common' into 'dev'
Update common sha
See merge request epi2melabs/workflows/wf-transcriptomes!230
|
2026-04-17 14:01:28 +00:00 |
|
Kiah McIntosh
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057fc0e886
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Update common sha
|
2026-04-17 14:01:28 +00:00 |
|
Chris Wright
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f4cae35818
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Merge branch 'cjw-codex-clean' into 'dev'
Bring up to date
See merge request epi2melabs/workflows/wf-transcriptomes!229
|
2026-04-17 12:29:58 +00:00 |
|
Chris Wright
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abbd3537ec
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Bring up to date
|
2026-04-17 12:29:57 +00:00 |
|
Kiah McIntosh
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c7bebf6428
|
Merge branch 'mr-feature' into 'dev'
Automated changes
See merge request epi2melabs/workflows/wf-transcriptomes!226
|
2025-12-08 14:50:51 +00:00 |
|
Chris Wright
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4fad6b85a8
|
Automated changes
|
2025-12-08 14:50:51 +00:00 |
|
Kiah McIntosh
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924119c98f
|
Merge branch 'tu-5.6.3' into 'dev'
Template update v5.6.3 [CW-6859]
See merge request epi2melabs/workflows/wf-transcriptomes!227
|
2025-12-05 18:16:59 +00:00 |
|
Kiah McIntosh
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90e6453a8f
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Template update v5.6.3 [CW-6859]
|
2025-12-05 18:16:58 +00:00 |
|
Neil Horner
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27d12e35ae
|
Merge branch 'sgriffiths-dev-patch-45208' into 'dev'
Update CHANGELOG.md
See merge request epi2melabs/workflows/wf-transcriptomes!224
|
2025-10-17 10:02:29 +00:00 |
|
Sarah Griffiths
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01387abb63
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Update CHANGELOG.md
|
2025-10-17 09:57:39 +00:00 |
|
Neil Horner
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27b57598ef
|
Merge branch 'tag-1.7.2' into 'dev'
tag v1.7.2
See merge request epi2melabs/workflows/wf-transcriptomes!223
|
2025-10-17 08:43:45 +00:00 |
|
Sarah Griffiths
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25b88c1321
|
tag v1.7.2
|
2025-10-17 08:43:44 +00:00 |
|
Rory Munro
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297c87e92f
|
Merge branch 'CW-6687/fix-workflow-title' into 'dev'
Fix display title
See merge request epi2melabs/workflows/wf-transcriptomes!222
|
2025-10-15 15:42:28 +00:00 |
|
Rory Munro
|
08ee6dc427
|
Fix display title
|
2025-10-14 17:23:38 +01:00 |
|
Sarah Griffiths
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7d5abe0c55
|
Merge branch 'final-tag' into 'dev'
tag v1.7.1
See merge request epi2melabs/workflows/wf-transcriptomes!220
|
2025-08-01 15:02:39 +00:00 |
|
Sarah Griffiths
|
e83c92a0e5
|
tag v1.7.1
|
2025-08-01 15:02:39 +00:00 |
|
Neil Horner
|
e2a7d23009
|
Merge branch 'sample_col_check_CW-6532' into 'dev'
Fix and simplify column name checking
Closes CW-6532
See merge request epi2melabs/workflows/wf-transcriptomes!221
|
2025-08-01 09:14:20 +00:00 |
|
Neil Horner
|
4fe583d4ea
|
Fix and simplify column name checking
|
2025-08-01 09:14:20 +00:00 |
|
Sarah Griffiths
|
7a94b2c515
|
Merge branch 'CW-6285' into 'dev'
Output dexseq file [CW-6285]
Closes CW-6285
See merge request epi2melabs/workflows/wf-transcriptomes!219
|
2025-07-29 08:54:20 +00:00 |
|
Sarah Griffiths
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62e4266040
|
Output dexseq file [CW-6285]
|
2025-07-29 08:54:20 +00:00 |
|
Sarah Griffiths
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a9e63518e5
|
Merge branch 'CW-6125' into 'dev'
Filter out unstranded annotations and log warning [CW-6125]
Closes CW-6125
See merge request epi2melabs/workflows/wf-transcriptomes!218
|
2025-06-20 08:43:15 +00:00 |
|
Sarah Griffiths
|
85b767358c
|
Filter out unstranded annotations and log warning [CW-6125]
|
2025-06-20 08:43:15 +00:00 |
|
Neil Horner
|
9f18c3f0d5
|
Merge branch 'container_update_CW-5998' into 'dev'
Container update CW-5998
See merge request epi2melabs/workflows/wf-transcriptomes!215
|
2025-05-16 08:38:28 +00:00 |
|
Neil Horner
|
b2ac1edbb9
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Container update CW-5998
|
2025-05-16 08:38:28 +00:00 |
|
Neil Horner
|
2df9061a48
|
Merge branch 'alias_hyphens_CW-5484' into 'dev'
Fix hyphens in sample alias CW-5484
See merge request epi2melabs/workflows/wf-transcriptomes!212
|
2025-05-14 13:55:02 +00:00 |
|
Neil Horner
|
19b54ba2ff
|
Fix hyphens in sample alias CW-5484
|
2025-05-14 13:55:01 +00:00 |
|
Neil Horner
|
bb47d92ac2
|
Merge branch 'TU_5.6.1' into 'dev'
Tu 5.6.1 [CW-6099]
See merge request epi2melabs/workflows/wf-transcriptomes!214
|
2025-05-09 07:05:35 +00:00 |
|
Neil Horner
|
c84a197da5
|
Tu 5.6.1 [CW-6099]
|
2025-05-09 07:05:34 +00:00 |
|
Neil Horner
|
1b3f49a1ac
|
Merge branch 'template_update_5.6.0' into 'dev'
Template update 5.6.0 [CW-6070]
See merge request epi2melabs/workflows/wf-transcriptomes!213
|
2025-05-06 10:23:01 +00:00 |
|
Neil Horner
|
18bf1d5b19
|
Template update 5.6.0 [CW-6070]
|
2025-05-06 10:23:01 +00:00 |
|
Sarah Griffiths
|
a74a34763e
|
Merge branch 'memory_mac_ci' into 'dev'
memory ci config
See merge request epi2melabs/workflows/wf-transcriptomes!211
|
2025-04-15 11:20:42 +00:00 |
|
Sarah Griffiths
|
11c9221edc
|
memory ci config
|
2025-04-15 11:20:42 +00:00 |
|
Sarah Griffiths
|
1d76e7326e
|
Merge branch 'CW-5950' into 'dev'
Fix aws/docker demo cmd [CW-5950]
Closes CW-5950
See merge request epi2melabs/workflows/wf-transcriptomes!210
|
2025-04-11 13:22:49 +00:00 |
|
Sarah Griffiths
|
00c2e9a18b
|
Fix aws/docker demo cmd [CW-5950]
|
2025-04-11 13:22:48 +00:00 |
|