Sarah Griffiths
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63e0fe6524
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change significance level to mark on MA plot
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2024-04-10 08:09:23 +00:00 |
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Sarah Griffiths
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bd5c89efc5
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Tag v1.1.1
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2024-03-05 11:47:23 +00:00 |
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Sarah Griffiths
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6a14a1d85b
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Remove need to retry based on GTF/GFF
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2024-02-22 09:34:38 +00:00 |
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Sarah Griffiths
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e3b1967872
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Improve ref annotation transcript id version handling
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2024-02-19 10:29:04 +00:00 |
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Sarah Griffiths
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e30d3aec98
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DE_analysis params change input types to numeric
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2024-02-16 10:23:15 +00:00 |
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Neil Horner
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bb9acf55be
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Resolve CW-3468 "Incorrect ids"
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2024-02-13 08:48:21 +00:00 |
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Neil Horner
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d5b0cc6203
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JAFFAL resources
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2024-02-12 15:25:19 +00:00 |
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Sarah Griffiths
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4bb02049ec
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Resource updates
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2024-02-12 10:20:02 +00:00 |
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Neil Horner
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fdb938a147
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Publish isoforms table
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2024-02-09 10:59:01 +00:00 |
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Sarah Griffiths
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bf136640ed
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No ref annotation workflow still completes
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2024-02-07 22:50:04 +00:00 |
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Sarah Griffiths
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1be77ba77f
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CW-3075 improve counts output files
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2024-02-02 10:38:50 +00:00 |
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Neil Horner
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f111755d12
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Resolve CW-3327 "Mapping 1 thread"
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2024-01-18 19:40:14 +00:00 |
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Sarah Griffiths
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3acf993586
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de_analysis include in sample cmd
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2023-12-08 09:32:07 +00:00 |
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Sarah Griffiths
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ed847d9a1f
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template update
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2023-12-07 14:05:02 +00:00 |
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Neil Horner
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d01162025a
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Resolve CW-2369
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2023-12-05 18:42:47 +00:00 |
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Sarah Griffiths
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35dc9dd722
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pychopper parameters clear up
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2023-12-04 21:12:57 +00:00 |
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Sarah Griffiths
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b870078142
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tag v0.4.2
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2023-11-17 10:06:36 +00:00 |
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Sarah Griffiths
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e1b2a08918
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control for sample sheet
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2023-10-25 10:41:08 +00:00 |
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Neil Horner
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25d2bfd07c
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Container pychop 2.7.9
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2023-10-04 16:23:32 +00:00 |
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Sarah Griffiths
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fb6182c717
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tag
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2023-09-28 08:18:11 +00:00 |
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Sarah Griffiths
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f683d44411
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CW-2769 remove denovo
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2023-09-27 08:02:00 +00:00 |
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Matt Parker
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2da8b8286c
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CW-2754-dead-links-readme
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2023-09-12 14:26:03 +01:00 |
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Sarah Griffiths
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edf3a24315
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deal with transcriptome fasta headers that contains |
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2023-09-06 20:18:40 +00:00 |
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Sarah Griffiths
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2ce40ee2f0
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common sha update and tag
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2023-08-10 12:48:45 +00:00 |
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Sarah Griffiths
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ab850ac67f
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tidy up DE outputs
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2023-08-10 10:05:11 +00:00 |
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Sarah Griffiths
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d535778497
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add titles
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2023-08-08 11:18:15 +00:00 |
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Sarah Griffiths
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b6159b2c26
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nf version
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2023-08-03 15:54:39 +00:00 |
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Sarah Griffiths
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ec3c346fd8
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fix and test for files with no gene id in attributes
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2023-07-26 18:14:00 +00:00 |
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Sarah Griffiths
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08de000d12
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CW-2209 docs remove =
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2023-07-25 09:51:34 +00:00 |
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Sarah Griffiths
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a58d08b6c4
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template updates
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2023-07-25 08:33:01 +00:00 |
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Sarah Griffiths
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f86b74a494
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CW-2217 fix ordering of sample_ids
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2023-07-12 11:05:34 +00:00 |
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Sarah Griffiths
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a3bc02888e
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tag v0.2.0
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2023-07-12 08:21:11 +00:00 |
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Sarah Griffiths
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df6c9a2a31
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CW-2313 remove condition sheet requirement
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2023-07-10 16:45:32 +00:00 |
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Sarah Griffiths
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79d5821c14
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CW-2307 ref_transcriptome default not null
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2023-06-28 15:19:41 +00:00 |
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Sam Nicholls
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8206a3173c
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GitHub issue templates [CW-2283]
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2023-06-20 19:18:00 +01:00 |
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Sarah Griffiths
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9f449ae467
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CW-2188 add test for denovo plus warnings
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2023-06-14 13:21:27 +00:00 |
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Sam Nicholls
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e359561703
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Update nextflowVersion to 22.10.8
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2023-06-12 11:28:39 +01:00 |
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Sarah Griffiths
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61deb0715f
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wf-transcriptomes template update
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2023-06-08 14:58:50 +00:00 |
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Sarah Griffiths
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ab275b6440
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CW-1920-Annotation-file-types
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2023-05-31 20:48:35 +00:00 |
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Sarah Griffiths
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970ffa9734
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tag
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2023-05-16 16:34:08 +00:00 |
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Sam Nicholls
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63bef44dcc
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Add AWS demo url configuration
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2023-05-16 14:59:53 +01:00 |
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Sarah Griffiths
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5df7e3c2cd
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template updates
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2023-05-09 10:09:33 +00:00 |
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Sarah Griffiths
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a4c472062c
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tag
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2023-04-06 08:28:13 +00:00 |
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Sarah Griffiths
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8053448d61
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CW-1882 CSV
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2023-04-04 11:54:35 +00:00 |
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Neil Horner
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39496c5f01
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V0.1.9 bump
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2023-02-27 09:32:16 +00:00 |
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Julian Libiseller-Egger
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136ece6a90
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update manifest description to match workflow card in app
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2022-12-05 21:04:41 +00:00 |
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Sarah Griffiths
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d3e48d4278
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tag
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2022-12-01 21:41:36 +00:00 |
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Sarah Griffiths
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43e746f0ea
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schema updates
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2022-12-01 21:05:01 +00:00 |
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Sarah Griffiths
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5477e721a2
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CW-1170 Fix failed to plot
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2022-11-16 20:11:44 +00:00 |
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Sarah Griffiths
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5de212cf57
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Move data to AWS
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2022-11-16 18:49:53 +00:00 |
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