Sarah Griffiths
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57c0f5b303
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Handle annotations with no strand CW-3998
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2024-06-25 13:08:32 +00:00 |
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Neil Horner
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cfa41f16d0
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BAM input CW-3512
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2024-06-04 09:25:31 +00:00 |
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Sarah Griffiths
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595aae4006
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Template update
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2024-04-03 09:47:29 +00:00 |
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Sarah Griffiths
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bd5c89efc5
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Tag v1.1.1
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2024-03-05 11:47:23 +00:00 |
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Neil Horner
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bb9acf55be
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Resolve CW-3468 "Incorrect ids"
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2024-02-13 08:48:21 +00:00 |
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Sarah Griffiths
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4bb02049ec
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Resource updates
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2024-02-12 10:20:02 +00:00 |
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Neil Horner
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fdb938a147
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Publish isoforms table
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2024-02-09 10:59:01 +00:00 |
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Sarah Griffiths
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1be77ba77f
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CW-3075 improve counts output files
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2024-02-02 10:38:50 +00:00 |
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Neil Horner
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b10ca2d9dc
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Fix demo command
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2024-01-17 15:16:07 +00:00 |
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Neil Horner
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92cb357edc
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Template updates 2024 01 12
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2024-01-16 11:48:09 +00:00 |
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Sarah Griffiths
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ed847d9a1f
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template update
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2023-12-07 14:05:02 +00:00 |
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Sarah Griffiths
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35dc9dd722
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pychopper parameters clear up
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2023-12-04 21:12:57 +00:00 |
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Sarah Griffiths
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045a077fe1
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docs update
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2023-12-01 12:36:33 +00:00 |
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Sarah Griffiths
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e1b2a08918
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control for sample sheet
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2023-10-25 10:41:08 +00:00 |
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Neil Horner
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8aa2a74437
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Container pychop 2.7.9
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2023-10-04 17:23:33 +00:00 |
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Sarah Griffiths
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f683d44411
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CW-2769 remove denovo
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2023-09-27 08:02:00 +00:00 |
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Neil Horner
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f86024c4f8
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Removed reference to condition sheet
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2023-09-20 11:05:09 +01:00 |
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Matt Parker
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2da8b8286c
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CW-2754-dead-links-readme
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2023-09-12 14:26:03 +01:00 |
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Sarah Griffiths
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edf3a24315
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deal with transcriptome fasta headers that contains |
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2023-09-06 20:18:40 +00:00 |
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Neil Horner
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326f0910fc
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Resolve CW-2700 "Demo not working"
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2023-09-06 08:59:17 +00:00 |
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Neil Horner
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9e6654422e
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Fix typo
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2023-08-31 22:52:18 +01:00 |
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Neil Horner
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816fe70b91
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Fix typo
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2023-08-11 15:34:42 +01:00 |
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Sarah Griffiths
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ab850ac67f
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tidy up DE outputs
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2023-08-10 10:05:11 +00:00 |
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Sarah Griffiths
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d535778497
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add titles
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2023-08-08 11:18:15 +00:00 |
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Neil Horner
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285e7c8ecf
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Remove unused parameter
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2023-07-26 21:09:29 +00:00 |
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Sarah Griffiths
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ec3c346fd8
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fix and test for files with no gene id in attributes
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2023-07-26 18:14:00 +00:00 |
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Sarah Griffiths
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08de000d12
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CW-2209 docs remove =
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2023-07-25 09:51:34 +00:00 |
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Sarah Griffiths
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df6c9a2a31
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CW-2313 remove condition sheet requirement
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2023-07-10 16:45:32 +00:00 |
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Neil Horner
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99d43b48b9
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Standardise parameters in readme
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2023-06-16 10:08:48 +00:00 |
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Neil Horner
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3ac202d457
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Typo
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2023-06-12 09:03:29 +01:00 |
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Sarah Griffiths
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ab275b6440
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CW-1920-Annotation-file-types
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2023-05-31 20:48:35 +00:00 |
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Neil Horner
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94a2e2c28c
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Update docs to remove JAFFAL install instructions
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2023-02-24 16:49:28 +00:00 |
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Neil Horner
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d8d8a791af
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Glue
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2023-02-24 14:42:57 +00:00 |
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Sarah Griffiths
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43e746f0ea
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schema updates
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2022-12-01 21:05:01 +00:00 |
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Sarah Griffiths
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5de212cf57
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Move data to AWS
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2022-11-16 18:49:53 +00:00 |
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Sarah Griffiths
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a111cae834
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CW-1167: error if conditionsheet and sample sheet dont match
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2022-11-15 14:59:43 +00:00 |
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Sarah Griffiths
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0758f4ab51
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demo data de
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2022-11-08 18:07:44 +00:00 |
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Sarah Griffiths
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c6b6121491
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CW-649
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2022-08-23 19:15:46 +00:00 |
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Neil Horner
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e63cc73b6c
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Fusions
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2022-08-01 19:07:20 +00:00 |
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Neil Horner
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956c80573a
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Fusions
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2022-08-01 12:01:01 +00:00 |
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Neil Horner
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d97e84cdc1
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Epi2melabs pychopper
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2022-06-01 12:08:00 +00:00 |
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Neil Horner
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e2f290b415
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New docs format
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2022-04-08 16:33:50 +00:00 |
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Neil Horner
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c2a0f8dc21
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Re-add ability to do direct RNA
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2022-04-05 18:04:16 +00:00 |
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Neil Horner
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03b8ba51f6
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Denovo bug fixes
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2022-03-02 11:34:21 +00:00 |
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Neil Horner
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5dfbb0f38a
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Merge de novo pipeline
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2022-01-26 15:54:55 +00:00 |
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Neil Horner
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458ac5d274
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Initial port of ref-isoforms to Nextflow
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2021-12-08 14:34:07 +00:00 |
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Chris Wright
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48a985f7c3
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Cut down readme to workflow particulars
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2021-07-22 13:55:44 +01:00 |
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Chris Wright
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e8e584d451
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Set fastq option straight
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2021-03-19 11:22:10 +00:00 |
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Chris Wright
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72ffce613c
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Standardise readme
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2021-03-09 17:21:21 +00:00 |
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Chris Wright
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d79c23ada4
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Merge branch 'dev' of workflow-containers/wf-template into dev
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2021-03-01 10:33:47 +00:00 |
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