Sarah Griffiths
|
f683d44411
|
CW-2769 remove denovo
|
2023-09-27 08:02:00 +00:00 |
|
Sarah Griffiths
|
edf3a24315
|
deal with transcriptome fasta headers that contains |
|
2023-09-06 20:18:40 +00:00 |
|
Sarah Griffiths
|
d535778497
|
add titles
|
2023-08-08 11:18:15 +00:00 |
|
Neil Horner
|
285e7c8ecf
|
Remove unused parameter
|
2023-07-26 21:09:29 +00:00 |
|
Sarah Griffiths
|
ec3c346fd8
|
fix and test for files with no gene id in attributes
|
2023-07-26 18:14:00 +00:00 |
|
Sarah Griffiths
|
df6c9a2a31
|
CW-2313 remove condition sheet requirement
|
2023-07-10 16:45:32 +00:00 |
|
Sam Nicholls
|
542f822ca6
|
Reconcile template
|
2023-07-04 10:13:05 +00:00 |
|
Sarah Griffiths
|
9f449ae467
|
CW-2188 add test for denovo plus warnings
|
2023-06-14 13:21:27 +00:00 |
|
Sarah Griffiths
|
ab275b6440
|
CW-1920-Annotation-file-types
|
2023-05-31 20:48:35 +00:00 |
|
Sarah Griffiths
|
1d5fcdd211
|
transcriptomes mac ci arm 64
|
2023-05-16 20:54:23 +00:00 |
|
Sarah Griffiths
|
43e746f0ea
|
schema updates
|
2022-12-01 21:05:01 +00:00 |
|
Sarah Griffiths
|
5de212cf57
|
Move data to AWS
|
2022-11-16 18:49:53 +00:00 |
|
Sarah Griffiths
|
cd1f97de4e
|
CW-1162 option to run DE without assembly transcriptome
|
2022-11-16 12:16:38 +00:00 |
|
Neil Horner
|
e339446a8a
|
Fix for when JAFFAL returns exit status 1 when no fusions are found
|
2022-11-15 19:56:46 +00:00 |
|
Sarah Griffiths
|
0758f4ab51
|
demo data de
|
2022-11-08 18:07:44 +00:00 |
|
Sarah Griffiths
|
c6b6121491
|
CW-649
|
2022-08-23 19:15:46 +00:00 |
|
Neil Horner
|
956c80573a
|
Fusions
|
2022-08-01 12:01:01 +00:00 |
|
Thomas Rich
|
7a61c04ed9
|
Update nextflow_schema.json
|
2022-07-27 14:35:40 +00:00 |
|
Neil Horner
|
458ac5d274
|
Initial port of ref-isoforms to Nextflow
|
2021-12-08 14:34:07 +00:00 |
|
Chris Wright
|
7e013608f9
|
Remove macos run
|
2021-04-29 16:16:33 +01:00 |
|
Chris Wright
|
57ff953621
|
mac docker
|
2021-04-29 16:04:48 +01:00 |
|
Chris Wright
|
c149382e3c
|
Add comments to ci
|
2021-03-17 12:16:47 +00:00 |
|
Chris Wright
|
67d98b9561
|
Add comments to ci
|
2021-03-17 11:28:56 +00:00 |
|
Chris Wright
|
fba94dcd8f
|
Switch to variable based command
|
2021-03-17 11:06:24 +00:00 |
|
Chris Wright
|
0511706888
|
Citemplate
|
2021-03-16 17:34:15 +00:00 |
|
Chris Wright
|
576e25306e
|
Update .gitlab-ci.yml
|
2021-03-16 15:37:31 +00:00 |
|
Chris Wright
|
d74cd3d048
|
Update .gitlab-ci.yml
|
2021-03-16 14:41:42 +00:00 |
|
Chris Wright
|
e829f60d95
|
Switch to ci template
|
2021-03-16 12:53:44 +00:00 |
|
Chris Wright
|
945de8ab93
|
Fix prerelease checks
|
2021-03-15 18:08:53 +00:00 |
|
Chris Wright
|
68cba9efc0
|
fix ci
|
2021-03-15 18:04:54 +00:00 |
|
Chris Wright
|
eea3040d74
|
fix ci
|
2021-03-15 17:36:22 +00:00 |
|
Chris Wright
|
5df27390f0
|
CI semicolons
|
2021-03-15 16:36:10 +00:00 |
|
Chris Wright
|
845bdceb7c
|
More CI fixes
|
2021-03-15 16:32:45 +00:00 |
|
Chris Wright
|
bc2392be4b
|
More CI fixes
|
2021-03-15 16:25:27 +00:00 |
|
Chris Wright
|
363826f0bd
|
Fix CI
|
2021-03-15 16:11:47 +00:00 |
|
Chris Wright
|
28ed81d845
|
Fix CI
|
2021-03-15 16:07:33 +00:00 |
|
Chris Wright
|
6533b2d9fe
|
deploy from dev branch
|
2021-03-15 16:00:58 +00:00 |
|
Chris Wright
|
b86690ea7d
|
Do not require github master branch before first push
|
2021-03-01 12:16:04 +00:00 |
|
Chris Wright
|
5c60ad6779
|
Backport additions from wf-artic
|
2021-02-24 17:45:39 +00:00 |
|
Chris Wright
|
b876c635ec
|
Update .gitlab-ci.yml
|
2021-02-18 18:45:41 +00:00 |
|
Chris Wright
|
55a2c4e0bc
|
Update .gitlab-ci.yml
|
2021-02-18 18:26:37 +00:00 |
|
Chris Wright
|
07f8415a88
|
Add github code push
|
2021-02-18 12:21:54 +00:00 |
|
Chris Wright
|
1815784a89
|
Parameterise dockerhub namespace
|
2021-02-09 15:59:24 +00:00 |
|
Chris Wright
|
dd2c1efd91
|
Condaenv
|
2021-01-29 18:05:35 +00:00 |
|
Chris Wright
|
dcdf42cb4e
|
First sketch
|
2021-01-29 15:04:44 +00:00 |
|