Neil Horner
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937a41f2cc
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Update memory for split_bam and build_minimap_index_transcriptome
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2025-01-03 17:06:38 +00:00 |
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Neil Horner
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c8c5922965
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Access to undefined channel output bug CW-5398
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2024-12-13 11:51:04 +00:00 |
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Neil Horner
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0a5c39cdf4
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Account for stringtie multigene transcript artefacts
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2024-12-12 14:30:31 +00:00 |
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Sarah Griffiths
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14fe76dabc
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CW-4613 IGV config
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2024-09-06 09:27:56 +00:00 |
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Neil Horner
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0200514536
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Remove fusion detection [CW-4552]
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2024-08-06 20:20:19 +00:00 |
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Sarah Griffiths
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57c0f5b303
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Handle annotations with no strand CW-3998
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2024-06-25 13:08:32 +00:00 |
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Neil Horner
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cfa41f16d0
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BAM input CW-3512
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2024-06-04 09:25:31 +00:00 |
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Sarah Griffiths
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595aae4006
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Template update
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2024-04-03 09:47:29 +00:00 |
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Sarah Griffiths
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e30d3aec98
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DE_analysis params change input types to numeric
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2024-02-16 10:23:15 +00:00 |
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Neil Horner
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d5b0cc6203
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JAFFAL resources
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2024-02-12 15:25:19 +00:00 |
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Sarah Griffiths
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4bb02049ec
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Resource updates
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2024-02-12 10:20:02 +00:00 |
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Sarah Griffiths
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bf136640ed
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No ref annotation workflow still completes
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2024-02-07 22:50:04 +00:00 |
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Sarah Griffiths
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35dc9dd722
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pychopper parameters clear up
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2023-12-04 21:12:57 +00:00 |
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Sarah Griffiths
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045a077fe1
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docs update
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2023-12-01 12:36:33 +00:00 |
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Sarah Griffiths
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f683d44411
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CW-2769 remove denovo
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2023-09-27 08:02:00 +00:00 |
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Sarah Griffiths
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edf3a24315
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deal with transcriptome fasta headers that contains |
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2023-09-06 20:18:40 +00:00 |
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Sarah Griffiths
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d535778497
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add titles
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2023-08-08 11:18:15 +00:00 |
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Neil Horner
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285e7c8ecf
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Remove unused parameter
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2023-07-26 21:09:29 +00:00 |
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Sarah Griffiths
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ec3c346fd8
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fix and test for files with no gene id in attributes
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2023-07-26 18:14:00 +00:00 |
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Sarah Griffiths
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df6c9a2a31
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CW-2313 remove condition sheet requirement
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2023-07-10 16:45:32 +00:00 |
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Sam Nicholls
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542f822ca6
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Reconcile template
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2023-07-04 10:13:05 +00:00 |
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Sarah Griffiths
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9f449ae467
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CW-2188 add test for denovo plus warnings
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2023-06-14 13:21:27 +00:00 |
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Sarah Griffiths
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ab275b6440
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CW-1920-Annotation-file-types
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2023-05-31 20:48:35 +00:00 |
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Sarah Griffiths
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1d5fcdd211
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transcriptomes mac ci arm 64
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2023-05-16 20:54:23 +00:00 |
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Sarah Griffiths
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43e746f0ea
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schema updates
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2022-12-01 21:05:01 +00:00 |
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Sarah Griffiths
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5de212cf57
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Move data to AWS
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2022-11-16 18:49:53 +00:00 |
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Sarah Griffiths
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cd1f97de4e
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CW-1162 option to run DE without assembly transcriptome
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2022-11-16 12:16:38 +00:00 |
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Neil Horner
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e339446a8a
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Fix for when JAFFAL returns exit status 1 when no fusions are found
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2022-11-15 19:56:46 +00:00 |
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Sarah Griffiths
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0758f4ab51
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demo data de
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2022-11-08 18:07:44 +00:00 |
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Sarah Griffiths
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c6b6121491
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CW-649
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2022-08-23 19:15:46 +00:00 |
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Neil Horner
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956c80573a
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Fusions
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2022-08-01 12:01:01 +00:00 |
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Thomas Rich
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7a61c04ed9
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Update nextflow_schema.json
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2022-07-27 14:35:40 +00:00 |
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Neil Horner
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458ac5d274
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Initial port of ref-isoforms to Nextflow
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2021-12-08 14:34:07 +00:00 |
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Chris Wright
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7e013608f9
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Remove macos run
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2021-04-29 16:16:33 +01:00 |
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Chris Wright
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57ff953621
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mac docker
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2021-04-29 16:04:48 +01:00 |
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Chris Wright
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c149382e3c
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Add comments to ci
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2021-03-17 12:16:47 +00:00 |
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Chris Wright
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67d98b9561
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Add comments to ci
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2021-03-17 11:28:56 +00:00 |
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Chris Wright
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fba94dcd8f
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Switch to variable based command
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2021-03-17 11:06:24 +00:00 |
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Chris Wright
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0511706888
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Citemplate
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2021-03-16 17:34:15 +00:00 |
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Chris Wright
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576e25306e
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Update .gitlab-ci.yml
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2021-03-16 15:37:31 +00:00 |
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Chris Wright
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d74cd3d048
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Update .gitlab-ci.yml
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2021-03-16 14:41:42 +00:00 |
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Chris Wright
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e829f60d95
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Switch to ci template
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2021-03-16 12:53:44 +00:00 |
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Chris Wright
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945de8ab93
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Fix prerelease checks
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2021-03-15 18:08:53 +00:00 |
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Chris Wright
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68cba9efc0
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fix ci
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2021-03-15 18:04:54 +00:00 |
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Chris Wright
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eea3040d74
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fix ci
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2021-03-15 17:36:22 +00:00 |
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Chris Wright
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5df27390f0
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CI semicolons
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2021-03-15 16:36:10 +00:00 |
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Chris Wright
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845bdceb7c
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More CI fixes
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2021-03-15 16:32:45 +00:00 |
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Chris Wright
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bc2392be4b
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More CI fixes
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2021-03-15 16:25:27 +00:00 |
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Chris Wright
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363826f0bd
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Fix CI
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2021-03-15 16:11:47 +00:00 |
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Chris Wright
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28ed81d845
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Fix CI
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2021-03-15 16:07:33 +00:00 |
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