Neil Horner
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c8c5922965
|
Access to undefined channel output bug CW-5398
|
2024-12-13 11:51:04 +00:00 |
|
Neil Horner
|
0a5c39cdf4
|
Account for stringtie multigene transcript artefacts
|
2024-12-12 14:30:31 +00:00 |
|
Sarah Griffiths
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465d060933
|
Actually output the dexseq file
|
2024-11-05 11:51:40 +00:00 |
|
Neil Horner
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5c4780a1b2
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Update report CW-3077
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2024-10-25 15:18:05 +00:00 |
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Sarah Griffiths
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d83807f38d
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Tidy de analysis
|
2024-09-16 09:26:12 +00:00 |
|
Sarah Griffiths
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7ced52c05b
|
Template updates
|
2024-09-11 12:47:01 +00:00 |
|
Sarah Griffiths
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14fe76dabc
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CW-4613 IGV config
|
2024-09-06 09:27:56 +00:00 |
|
Neil Horner
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f62ec6c127
|
Missed v from version
|
2024-08-08 13:08:59 +01:00 |
|
Neil Horner
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abc40d9015
|
Add new cDNA kits
|
2024-08-07 11:31:14 +00:00 |
|
Neil Horner
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0200514536
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Remove fusion detection [CW-4552]
|
2024-08-06 20:20:19 +00:00 |
|
Neil Horner
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a5699b2945
|
Bump v1.2.1
|
2024-07-04 14:48:30 +00:00 |
|
Neil Horner
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1fed562746
|
Merge branch 'pychop_threads_CW-4010' into 'dev'
Give pychopper more threads
See merge request epi2melabs/workflows/wf-transcriptomes!174
|
2024-06-25 14:11:28 +00:00 |
|
Neil Horner
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411290d5a4
|
Give pychopper more threads
|
2024-06-25 14:11:28 +00:00 |
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Sarah Griffiths
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57c0f5b303
|
Handle annotations with no strand CW-3998
|
2024-06-25 13:08:32 +00:00 |
|
Neil Horner
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515c8c0ed8
|
Bump v1.2.0
|
2024-06-04 17:28:29 +00:00 |
|
Sarah Griffiths
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63e0fe6524
|
change significance level to mark on MA plot
|
2024-04-10 08:09:23 +00:00 |
|
Sarah Griffiths
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bd5c89efc5
|
Tag v1.1.1
|
2024-03-05 11:47:23 +00:00 |
|
Sarah Griffiths
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6a14a1d85b
|
Remove need to retry based on GTF/GFF
|
2024-02-22 09:34:38 +00:00 |
|
Sarah Griffiths
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e3b1967872
|
Improve ref annotation transcript id version handling
|
2024-02-19 10:29:04 +00:00 |
|
Sarah Griffiths
|
e30d3aec98
|
DE_analysis params change input types to numeric
|
2024-02-16 10:23:15 +00:00 |
|
Neil Horner
|
bb9acf55be
|
Resolve CW-3468 "Incorrect ids"
|
2024-02-13 08:48:21 +00:00 |
|
Neil Horner
|
d5b0cc6203
|
JAFFAL resources
|
2024-02-12 15:25:19 +00:00 |
|
Sarah Griffiths
|
4bb02049ec
|
Resource updates
|
2024-02-12 10:20:02 +00:00 |
|
Neil Horner
|
fdb938a147
|
Publish isoforms table
|
2024-02-09 10:59:01 +00:00 |
|
Sarah Griffiths
|
bf136640ed
|
No ref annotation workflow still completes
|
2024-02-07 22:50:04 +00:00 |
|
Sarah Griffiths
|
1be77ba77f
|
CW-3075 improve counts output files
|
2024-02-02 10:38:50 +00:00 |
|
Neil Horner
|
f111755d12
|
Resolve CW-3327 "Mapping 1 thread"
|
2024-01-18 19:40:14 +00:00 |
|
Sarah Griffiths
|
3acf993586
|
de_analysis include in sample cmd
|
2023-12-08 09:32:07 +00:00 |
|
Sarah Griffiths
|
ed847d9a1f
|
template update
|
2023-12-07 14:05:02 +00:00 |
|
Neil Horner
|
d01162025a
|
Resolve CW-2369
|
2023-12-05 18:42:47 +00:00 |
|
Sarah Griffiths
|
35dc9dd722
|
pychopper parameters clear up
|
2023-12-04 21:12:57 +00:00 |
|
Sarah Griffiths
|
b870078142
|
tag v0.4.2
|
2023-11-17 10:06:36 +00:00 |
|
Sarah Griffiths
|
e1b2a08918
|
control for sample sheet
|
2023-10-25 10:41:08 +00:00 |
|
Neil Horner
|
25d2bfd07c
|
Container pychop 2.7.9
|
2023-10-04 16:23:32 +00:00 |
|
Sarah Griffiths
|
fb6182c717
|
tag
|
2023-09-28 08:18:11 +00:00 |
|
Sarah Griffiths
|
f683d44411
|
CW-2769 remove denovo
|
2023-09-27 08:02:00 +00:00 |
|
Matt Parker
|
2da8b8286c
|
CW-2754-dead-links-readme
|
2023-09-12 14:26:03 +01:00 |
|
Sarah Griffiths
|
edf3a24315
|
deal with transcriptome fasta headers that contains |
|
2023-09-06 20:18:40 +00:00 |
|
Sarah Griffiths
|
2ce40ee2f0
|
common sha update and tag
|
2023-08-10 12:48:45 +00:00 |
|
Sarah Griffiths
|
ab850ac67f
|
tidy up DE outputs
|
2023-08-10 10:05:11 +00:00 |
|
Sarah Griffiths
|
d535778497
|
add titles
|
2023-08-08 11:18:15 +00:00 |
|
Sarah Griffiths
|
b6159b2c26
|
nf version
|
2023-08-03 15:54:39 +00:00 |
|
Sarah Griffiths
|
ec3c346fd8
|
fix and test for files with no gene id in attributes
|
2023-07-26 18:14:00 +00:00 |
|
Sarah Griffiths
|
08de000d12
|
CW-2209 docs remove =
|
2023-07-25 09:51:34 +00:00 |
|
Sarah Griffiths
|
a58d08b6c4
|
template updates
|
2023-07-25 08:33:01 +00:00 |
|
Sarah Griffiths
|
f86b74a494
|
CW-2217 fix ordering of sample_ids
|
2023-07-12 11:05:34 +00:00 |
|
Sarah Griffiths
|
a3bc02888e
|
tag v0.2.0
|
2023-07-12 08:21:11 +00:00 |
|
Sarah Griffiths
|
df6c9a2a31
|
CW-2313 remove condition sheet requirement
|
2023-07-10 16:45:32 +00:00 |
|
Sarah Griffiths
|
79d5821c14
|
CW-2307 ref_transcriptome default not null
|
2023-06-28 15:19:41 +00:00 |
|
Sam Nicholls
|
8206a3173c
|
GitHub issue templates [CW-2283]
|
2023-06-20 19:18:00 +01:00 |
|