Sarah Griffiths
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3ca4511b5b
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Add force alignment option [CW-7274]
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2026-05-26 14:44:50 +00:00 |
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Kiah McIntosh
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dff1353790
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Tube map update
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2026-05-26 12:27:15 +00:00 |
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Sam Nicholls
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175e6c9437
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Per-sample pileup counts [CW-7196]
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2026-05-26 09:52:38 +00:00 |
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Kiah McIntosh
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df2d333797
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Add modkit to tube map
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2026-05-22 16:33:01 +00:00 |
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Kiah McIntosh
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1f456da61d
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SQANTI3 results in report [CW-7238]
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2026-05-22 15:28:21 +00:00 |
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Kiah McIntosh
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90cc4cf73b
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Update readme for alignment and ingress outputs [CW-7270]
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2026-05-22 10:44:40 +00:00 |
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Kiah McIntosh
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f5e5f3a790
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Alignment outputs in per sample folder [CW-7270]
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2026-05-22 09:12:26 +00:00 |
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Kiah McIntosh
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e35810dcea
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Remove pychopper remnants [CW-7246]
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2026-05-18 12:54:01 +00:00 |
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Chris Wright
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31d1ffe038
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[CW-7192] remove full length filtering
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2026-05-15 15:15:07 +00:00 |
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Kiah McIntosh
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225f9c4a44
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Add tube map [CW-7218]
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2026-05-14 10:50:18 +00:00 |
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Sam Nicholls
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06d77b2543
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Use new alignment ingress [CW-7186][CW-7202][CW-7229]
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2026-05-14 09:12:38 +00:00 |
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Chris Wright
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f2458c5603
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[CW-7172] Improve testing and reporting on differential analysis analysis
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2026-05-11 09:42:54 +00:00 |
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Chris Wright
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3e0dfd21e2
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[CW-7166] [CW-7169] Reference and annotation preparation
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2026-05-07 10:09:36 +00:00 |
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Chris Wright
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43cf5bf42a
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Refresh workflow to use bambu, sqanti, and dexseq
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2026-05-05 14:10:04 +00:00 |
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Chris Wright
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abbd3537ec
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Bring up to date
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2026-04-17 12:29:57 +00:00 |
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Kiah McIntosh
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90e6453a8f
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Template update v5.6.3 [CW-6859]
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2025-12-05 18:16:58 +00:00 |
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Neil Horner
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18bf1d5b19
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Template update 5.6.0 [CW-6070]
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2025-05-06 10:23:01 +00:00 |
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Sarah Griffiths
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00c2e9a18b
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Fix aws/docker demo cmd [CW-5950]
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2025-04-11 13:22:48 +00:00 |
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Chris Wright
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d2c1db81e8
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remove spaces in {{ ref_genome file }} in docs
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2025-03-04 16:24:06 +00:00 |
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Neil Horner
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e534921877
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Update schema
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2025-01-23 10:59:31 +00:00 |
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Sarah Griffiths
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465d060933
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Actually output the dexseq file
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2024-11-05 11:51:40 +00:00 |
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Neil Horner
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5c4780a1b2
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Update report CW-3077
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2024-10-25 15:18:05 +00:00 |
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Sarah Griffiths
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7ced52c05b
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Template updates
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2024-09-11 12:47:01 +00:00 |
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Sarah Griffiths
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14fe76dabc
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CW-4613 IGV config
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2024-09-06 09:27:56 +00:00 |
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Neil Horner
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0200514536
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Remove fusion detection [CW-4552]
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2024-08-06 20:20:19 +00:00 |
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Neil Horner
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0f4eee002a
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template update 2024-07-10
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2024-07-26 08:34:05 +00:00 |
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Neil Horner
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c662293317
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Template update
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2024-06-27 16:13:55 +01:00 |
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Sarah Griffiths
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57c0f5b303
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Handle annotations with no strand CW-3998
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2024-06-25 13:08:32 +00:00 |
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Neil Horner
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cfa41f16d0
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BAM input CW-3512
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2024-06-04 09:25:31 +00:00 |
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Sarah Griffiths
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595aae4006
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Template update
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2024-04-03 09:47:29 +00:00 |
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Sarah Griffiths
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bd5c89efc5
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Tag v1.1.1
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2024-03-05 11:47:23 +00:00 |
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Neil Horner
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bb9acf55be
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Resolve CW-3468 "Incorrect ids"
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2024-02-13 08:48:21 +00:00 |
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Sarah Griffiths
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4bb02049ec
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Resource updates
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2024-02-12 10:20:02 +00:00 |
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Neil Horner
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fdb938a147
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Publish isoforms table
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2024-02-09 10:59:01 +00:00 |
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Sarah Griffiths
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1be77ba77f
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CW-3075 improve counts output files
|
2024-02-02 10:38:50 +00:00 |
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Neil Horner
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b10ca2d9dc
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Fix demo command
|
2024-01-17 15:16:07 +00:00 |
|
Neil Horner
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92cb357edc
|
Template updates 2024 01 12
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2024-01-16 11:48:09 +00:00 |
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Sarah Griffiths
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ed847d9a1f
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template update
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2023-12-07 14:05:02 +00:00 |
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Sarah Griffiths
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35dc9dd722
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pychopper parameters clear up
|
2023-12-04 21:12:57 +00:00 |
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Sarah Griffiths
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045a077fe1
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docs update
|
2023-12-01 12:36:33 +00:00 |
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Sarah Griffiths
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e1b2a08918
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control for sample sheet
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2023-10-25 10:41:08 +00:00 |
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Neil Horner
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8aa2a74437
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Container pychop 2.7.9
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2023-10-04 17:23:33 +00:00 |
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Sarah Griffiths
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f683d44411
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CW-2769 remove denovo
|
2023-09-27 08:02:00 +00:00 |
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Neil Horner
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f86024c4f8
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Removed reference to condition sheet
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2023-09-20 11:05:09 +01:00 |
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Matt Parker
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2da8b8286c
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CW-2754-dead-links-readme
|
2023-09-12 14:26:03 +01:00 |
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Sarah Griffiths
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edf3a24315
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deal with transcriptome fasta headers that contains |
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2023-09-06 20:18:40 +00:00 |
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Neil Horner
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326f0910fc
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Resolve CW-2700 "Demo not working"
|
2023-09-06 08:59:17 +00:00 |
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Neil Horner
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9e6654422e
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Fix typo
|
2023-08-31 22:52:18 +01:00 |
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Neil Horner
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816fe70b91
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Fix typo
|
2023-08-11 15:34:42 +01:00 |
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Sarah Griffiths
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ab850ac67f
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tidy up DE outputs
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2023-08-10 10:05:11 +00:00 |
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