kfukuta/wf-transcriptomes-v202
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  • 9d0c835fbf Merge branch 'CW-3468_incorrect_ids' into 'dev' Neil Horner 2024-02-13 08:48:21 +0000
  • bb9acf55be Resolve CW-3468 "Incorrect ids" Neil Horner 2024-02-13 08:48:21 +0000
  • 4f671051c1 Merge branch 'CW-3334_jaffa_mem' into 'dev' Neil Horner 2024-02-12 15:25:19 +0000
  • d5b0cc6203 JAFFAL resources Neil Horner 2024-02-12 15:25:19 +0000
  • f025538f17 Merge branch 'resource-updates' into 'dev' Sarah Griffiths 2024-02-12 10:20:04 +0000
  • 4bb02049ec Resource updates Sarah Griffiths 2024-02-12 10:20:02 +0000
  • 9cf89d4360 Merge branch 'CW-3075-b' into 'dev' Sarah Griffiths 2024-02-09 21:45:22 +0000
  • 1c67e3274e Seperate DE files required for the report and to be output to the user Sarah Griffiths 2024-02-09 21:45:22 +0000
  • 46f748f493 Merge branch 'CW-2971_publish_table' into 'dev' Neil Horner 2024-02-09 10:59:02 +0000
  • fdb938a147 Publish isoforms table Neil Horner 2024-02-09 10:59:01 +0000
  • 84dbafd1c9 Merge branch 'CW-3174' into 'dev' Sarah Griffiths 2024-02-07 22:50:04 +0000
  • bf136640ed No ref annotation workflow still completes Sarah Griffiths 2024-02-07 22:50:04 +0000
  • 077ad86a92 Merge branch 'CW-3075' into 'dev' Sarah Griffiths 2024-02-02 10:38:51 +0000
  • 1be77ba77f CW-3075 improve counts output files Sarah Griffiths 2024-02-02 10:38:50 +0000
  • 04e76d4271 Merge branch 'CW-3327_mapping_1_thread' into 'dev' Neil Horner 2024-01-18 19:40:14 +0000
  • f111755d12 Resolve CW-3327 "Mapping 1 thread" Neil Horner 2024-01-18 19:40:14 +0000
  • fbd1bf819c Merge branch 'demo_typo' into 'dev' Neil Horner 2024-01-17 15:16:07 +0000
  • b10ca2d9dc Fix demo command Neil Horner 2024-01-17 15:16:07 +0000
  • 58d7c7db5e Merge branch 'template_updates_2024-01-12' into 'dev' Sarah Griffiths 2024-01-16 11:48:09 +0000
  • 92cb357edc Template updates 2024 01 12 Neil Horner 2024-01-16 11:48:09 +0000
  • a979ad1774 Merge branch 'temp-up' into 'dev' Sarah Griffiths 2024-01-04 10:18:39 +0000
  • 07b9edcb99 Temp up Sarah Griffiths 2024-01-04 10:18:39 +0000
  • c66a48525f Merge branch 'example-cmd-again' into 'dev' Sarah Griffiths 2023-12-08 14:35:24 +0000
  • 45dc9efb49 example cmd update Sarah Griffiths 2023-12-08 14:35:24 +0000
  • 6e5b1262ff Merge branch 'de_analysis_example_cmd' into 'dev' Sarah Griffiths 2023-12-08 09:32:08 +0000
  • 3acf993586 de_analysis include in sample cmd Sarah Griffiths 2023-12-08 09:32:07 +0000
  • 1a62c724b3 Merge branch 'template-tag' into 'dev' Sarah Griffiths 2023-12-07 14:05:03 +0000
  • ed847d9a1f template update Sarah Griffiths 2023-12-07 14:05:02 +0000
  • 2580c99ae4 Merge branch 'CW-2369' into 'dev' Sarah Griffiths 2023-12-05 18:42:47 +0000
  • d01162025a Resolve CW-2369 Neil Horner 2023-12-05 18:42:47 +0000
  • feed09c16c Merge branch 'CW-3127' into 'dev' Sarah Griffiths 2023-12-04 21:12:57 +0000
  • 35dc9dd722 pychopper parameters clear up Sarah Griffiths 2023-12-04 21:12:57 +0000
  • d8fe530905 Merge branch 'CW-3105' into 'dev' Sarah Griffiths 2023-12-01 12:36:33 +0000
  • 045a077fe1 docs update Sarah Griffiths 2023-12-01 12:36:33 +0000
  • 26a78df739 Merge branch 'tag-v0.4.2' into 'dev' Sarah Griffiths 2023-11-17 10:06:36 +0000
  • b870078142 tag v0.4.2 Sarah Griffiths 2023-11-17 10:06:36 +0000
  • 7f5fe27bc2 Merge branch 'CW-2891' into 'dev' Sarah Griffiths 2023-10-25 10:41:08 +0000
  • e1b2a08918 control for sample sheet Sarah Griffiths 2023-10-25 10:41:08 +0000
  • 3fdef39c90 Merge branch 'update-template' into 'dev' Sam Nicholls 2023-10-16 14:17:32 +0000
  • bb99170130 Template updates [CW-1564][CW-2303][CW-2855] Sam Nicholls 2023-10-16 14:17:32 +0000
  • 0a8fe19e7c Merge branch 'container_pychop_2.7.9' into 'dev' Neil Horner 2023-10-04 17:23:33 +0000
  • 8aa2a74437 Container pychop 2.7.9 Neil Horner 2023-10-04 17:23:33 +0000
  • c9f3b8da4a Merge branch 'container_pychop_2.7.9' into 'dev' Neil Horner 2023-10-04 16:23:32 +0000
  • 25d2bfd07c Container pychop 2.7.9 Neil Horner 2023-10-04 16:23:32 +0000
  • 82610c7f69 Merge branch 'tag' into 'dev' Sarah Griffiths 2023-09-28 08:18:12 +0000
  • fb6182c717 tag Sarah Griffiths 2023-09-28 08:18:11 +0000
  • 6f1e00aa2a Merge branch 'CW-2769' into 'dev' Sarah Griffiths 2023-09-27 08:02:00 +0000
  • f683d44411 CW-2769 remove denovo Sarah Griffiths 2023-09-27 08:02:00 +0000
  • 5d16332a2c Merge branch 'condition_sheet_docs' into 'dev' Neil Horner 2023-09-20 12:18:11 +0000
  • f86024c4f8 Removed reference to condition sheet Neil Horner 2023-09-20 11:05:09 +0100
  • 4f589b2008 Merge branch 'CW-2754-dead-links-readme' into 'dev' Matt Parker 2023-09-12 13:31:52 +0000
  • 2da8b8286c CW-2754-dead-links-readme Matt Parker 2023-09-12 14:26:03 +0100
  • 7cd69ab26f Merge branch 'wrong-version' into 'dev' Sarah Griffiths 2023-09-08 10:55:54 +0000
  • 7e2d0214e4 update version Sarah Griffiths 2023-09-08 10:55:54 +0000
  • 57d4bf932d Merge branch 'CW-2680' into 'dev' Sarah Griffiths 2023-09-06 20:18:40 +0000
  • edf3a24315 deal with transcriptome fasta headers that contains | Sarah Griffiths 2023-09-06 20:18:40 +0000
  • 36d37a8d5f Merge branch 'CW-2700_demo_not_working' into 'dev' Neil Horner 2023-09-06 08:59:17 +0000
  • 326f0910fc Resolve CW-2700 "Demo not working" Neil Horner 2023-09-06 08:59:17 +0000
  • 9447f7404d Merge branch 'params-fix' into 'dev' Sarah Griffiths 2023-09-06 08:00:10 +0000
  • 4065a4d82f params update defaults Sarah Griffiths 2023-09-06 08:00:10 +0000
  • 68ff1931c5 Merge branch 'template-update' into 'dev' Sarah Griffiths 2023-09-05 08:57:28 +0000
  • 2bda37388c Update fastqingress.nf Sarah Griffiths 2023-09-05 08:57:28 +0000
  • d9ee1034a3 Merge branch 'template-update' into 'dev' Sarah Griffiths 2023-09-04 09:24:15 +0000
  • fb718ac3f7 Update file check_sample_sheet.py Sarah Griffiths 2023-09-01 16:03:19 +0000
  • 261437ad81 Merge branch 'CW-2674_docs' into 'dev' Neil Horner 2023-09-01 08:46:46 +0000
  • 9e6654422e Fix typo Neil Horner 2023-08-31 22:52:18 +0100
  • 3509cebde4 Merge branch 'gh26_typo' into 'dev' Neil Horner 2023-08-11 15:23:16 +0000
  • 816fe70b91 Fix typo Neil Horner 2023-08-11 15:34:42 +0100
  • fcc7347a8b Merge branch 'common-sha-and-tag' into 'dev' Sarah Griffiths 2023-08-10 12:48:46 +0000
  • 2ce40ee2f0 common sha update and tag Sarah Griffiths 2023-08-10 12:48:45 +0000
  • 1153e705fa Merge branch 'CW-2498' into 'dev' Sarah Griffiths 2023-08-10 10:05:11 +0000
  • ab850ac67f tidy up DE outputs Sarah Griffiths 2023-08-10 10:05:11 +0000
  • 3a5de57317 Merge branch 'schema-5.1.1' into 'dev' Sarah Griffiths 2023-08-08 11:18:15 +0000
  • d535778497 add titles Sarah Griffiths 2023-08-08 11:18:15 +0000
  • dd8466e62d Merge branch 'nextflow-version' into 'dev' Sarah Griffiths 2023-08-03 15:54:39 +0000
  • b6159b2c26 nf version Sarah Griffiths 2023-08-03 15:54:39 +0000
  • 838d19de45 Merge branch 'remove_transcriptoe_assembly_option' into 'dev' Sarah Griffiths 2023-07-26 21:09:29 +0000
  • 285e7c8ecf Remove unused parameter Neil Horner 2023-07-26 21:09:29 +0000
  • e56aefe7db Merge branch 'CW-2362-no-gene-id' into 'dev' Sarah Griffiths 2023-07-26 18:14:00 +0000
  • ec3c346fd8 fix and test for files with no gene id in attributes Sarah Griffiths 2023-07-26 18:14:00 +0000
  • 805c15297e Merge branch 'CW-2209-docs' into 'dev' Sarah Griffiths 2023-07-25 09:51:34 +0000
  • 08de000d12 CW-2209 docs remove = Sarah Griffiths 2023-07-25 09:51:34 +0000
  • 941532588d Merge branch 'template-updates' into 'dev' Sarah Griffiths 2023-07-25 08:33:01 +0000
  • a58d08b6c4 template updates Sarah Griffiths 2023-07-25 08:33:01 +0000
  • 2a5ae64617 Merge branch 'CW-2217' into 'dev' Sarah Griffiths 2023-07-12 11:05:34 +0000
  • f86b74a494 CW-2217 fix ordering of sample_ids Sarah Griffiths 2023-07-12 11:05:34 +0000
  • 25518e37c5 Merge branch 'tag-v0.1.14' into 'dev' Sarah Griffiths 2023-07-12 08:21:12 +0000
  • a3bc02888e tag v0.2.0 Sarah Griffiths 2023-07-12 08:21:11 +0000
  • 40b4277576 Merge branch 'CW-2313' into 'dev' Sarah Griffiths 2023-07-10 16:45:32 +0000
  • df6c9a2a31 CW-2313 remove condition sheet requirement Sarah Griffiths 2023-07-10 16:45:32 +0000
  • a246453164 Merge branch 'cw-2346' into 'dev' Neil Horner 2023-07-04 12:56:09 +0000
  • 8d6545b462 Hide jaffal_dir option Sam Nicholls 2023-07-03 14:28:00 +0000
  • 53c933aac6 Merge branch 'add-util' into 'dev' Neil Horner 2023-07-04 10:13:05 +0000
  • 542f822ca6 Reconcile template Sam Nicholls 2023-07-04 10:13:05 +0000
  • ea2dde72df Merge branch 'CW-2308' into 'dev' Sarah Griffiths 2023-06-28 17:37:49 +0000
  • d0e7fc4b26 CW-2308 remove real path use Sarah Griffiths 2023-06-28 17:37:49 +0000
  • a730e13ac8 Merge branch 'CW-2307' into 'dev' Sarah Griffiths 2023-06-28 15:19:41 +0000
  • 79d5821c14 CW-2307 ref_transcriptome default not null Sarah Griffiths 2023-06-28 15:19:41 +0000
  • cb34c14421 Merge branch 'cw-2283' into 'dev' Sarah Griffiths 2023-06-26 11:48:59 +0000
  • 8206a3173c GitHub issue templates [CW-2283] Sam Nicholls 2023-06-20 19:18:00 +0100